View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20312_low_4 (Length: 580)
Name: NF20312_low_4
Description: NF20312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20312_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 15 - 558
Target Start/End: Original strand, 52926080 - 52926623
Alignment:
| Q |
15 |
acatcatcagcatttactctggtgattgcggagcggtgagcacgatcctcaacttcaatagcaagttgaacaagaccaccttcaagagtggaaatgcagg |
114 |
Q |
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| T |
52926080 |
acatcatcagcatttactctggtgattgcggagcggtgagcacgatcttcaacttcaatagcaagttgaacaagaccaccttcaagagtggaaatgcagg |
52926179 |
T |
|
| Q |
115 |
gtggaacgggagcatcctgtgggttggtttcagcagcaacagtactgagtgcttggtcaagaacataaatgaaagaggaagaatcgaagtcttgttgaga |
214 |
Q |
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| T |
52926180 |
gtggaacgggagcatcctgtgggttggtttcagcagcaacagtactgagtgcttggtcaagaacataaatgaaagaggaagaatcgaagtcttgttgaga |
52926279 |
T |
|
| Q |
215 |
gcgatagcaaacaaagagaccgcaaccgatgcaattcatgcggaattgtttctcgagtttgccttggccacgctttaagagaacgttgccagcttcgtga |
314 |
Q |
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| T |
52926280 |
gcgatagcaaacaaagagaccgcaaccgatgcaattcatgcggaattgtttctcgagtttgccttggccacgctttaagagaacgttgccagcttcgtga |
52926379 |
T |
|
| Q |
315 |
atattgaatcttgcaagatgtttggtcttatccaaaacgtaagctctgtcagtgtttcttcgaggcattttctgcaactgggtatctgcgattgcaatta |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52926380 |
atattgaatcttgcaagatgtttggtcttatccaaaacgtaagctctgtcagtgtttcttcgaggcattttctgcaactgggtatctgcgattgcaatta |
52926479 |
T |
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| Q |
415 |
ggttacaactttcaattcaatttgatatgttattatgaatgaatgattcattaccagtgatgagaacatgggatccgcagtgtttgcagtaataaacgaa |
514 |
Q |
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|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52926480 |
ggttactactttcaattcaatttgatgtgttattatgaatgaatgattcattaccagtgatgagaacatgggatccgcagtgtttgcagtaataaacgaa |
52926579 |
T |
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| Q |
515 |
gagatcggagtgtgggccctcaggagctgcatcctcgcttgagt |
558 |
Q |
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| T |
52926580 |
gagatcggagtgtgggccctcaggagctgcatcctcgcttgagt |
52926623 |
T |
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