View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20312_low_41 (Length: 231)
Name: NF20312_low_41
Description: NF20312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20312_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 4709376 - 4709176
Alignment:
| Q |
19 |
atactgtttcttgttggcactccaaagtaccgacatttcaagcccagtggcaaccctcttgccaggttctgccaagtccttgttgctgcatcaaggaaag |
118 |
Q |
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| T |
4709376 |
atactgtttcttgttggcactccaaagtaccgacatttcaagcccagtggcaaccctcttgccaggttctgccaagtccttgttgctgcatcaaggaaag |
4709277 |
T |
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| Q |
119 |
ttaaagttgaaatgccatcaaatggagacgacttgtacaacatggatacaaaggagtcttctaccgatgtgaacagaaaaatcctccacacacacaggtt |
218 |
Q |
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| T |
4709276 |
ttaaagttgaaatgccatcaaatggagacgacttgtacaacatggatacaaaggagtcttctaccgatgtgaacagaaaaatcctccacacacacgggtt |
4709177 |
T |
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| Q |
219 |
c |
219 |
Q |
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| T |
4709176 |
c |
4709176 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 181
Target Start/End: Original strand, 40743149 - 40743310
Alignment:
| Q |
20 |
tactgtttcttgttggcactccaaagtaccgacatttcaagcccagtggcaaccctcttgccaggttctgccaagtccttgttgctgcatcaaggaaagt |
119 |
Q |
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|||| |||||||||||||| ||||| || |||| || || || ||||||| |||||| | || ||||||||||| || | ||||| ||||||||| | |
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| T |
40743149 |
tactttttcttgttggcaccccaaaatatagacactttaaaccttgtggcaatcctctttctagattctgccaagtgtttttcgctgcttcaaggaaatt |
40743248 |
T |
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| Q |
120 |
taaagttgaaatgccatcaaatggagacgacttgtacaacatggatacaaaggagtcttcta |
181 |
Q |
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| T |
40743249 |
gggagttcaaatgacttcaaatggagatgacttgtatgtcatagatgaaaaggagtcttcta |
40743310 |
T |
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