View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20312_low_44 (Length: 217)
Name: NF20312_low_44
Description: NF20312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20312_low_44 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 21979151 - 21978967
Alignment:
| Q |
16 |
aatatttaaagatggaagaaaagagtctactcatatttgtnnnnnnncagctaagtaactaacttaggctgctcacgaagatgtggtcagatacaaagct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21979151 |
aatatttaaagatggaagaaaagagtctactcatatttgtaaaaaaacagctaagtaactaacttaggctgctcacgaagatgtggtcagatacaaagct |
21979052 |
T |
|
| Q |
116 |
ttaaagagaagatgaatacatatagcttatcccggacttatattaatgtcatctt-ttttattgtcctacattcttttgttcttc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
21979051 |
ttaaagagaagatgaatacatatagcttatctcggacttatattaatgtcatctttttttattgtcctacattcttttgttcttc |
21978967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University