View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20312_low_5 (Length: 548)
Name: NF20312_low_5
Description: NF20312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20312_low_5 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 502; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 14 - 548
Target Start/End: Original strand, 40093306 - 40093840
Alignment:
| Q |
14 |
catcagaactatggagcnnnnnnngacacatggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaagactcttgatctct |
113 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093306 |
catcagaactatggagctttttttgacacatggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaagactcttgatctct |
40093405 |
T |
|
| Q |
114 |
cctctcggaagtggacatatcaggtcagtcttcacttttgatcgaagactatttattagtcttacatagttaatggagttaattcttttgatacaggttg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093406 |
cctctcggaagtggacatatcaggtcagtcttcacttttgatcgaagactatttgttagtcttacatagttaatggagttaattcttttgatacaggttg |
40093505 |
T |
|
| Q |
214 |
gcctaaaaggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaagactactttccctaagaaacaaccattgatttggtacaaggt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093506 |
gcctaaaaggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaagactactttccctaagaaacaaccattgatttggtacaaggt |
40093605 |
T |
|
| Q |
314 |
aatttaattttcaatttattgtttcccttgatataagttatggaatttcaaattaaaagaacgccactatatgaaaaatgttttttgctactaaccaatg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093606 |
aatttaattttcaatttattgtttcccttgatataagttatggaatttcaaattaaaagaacgccactatatgaaaaatgttttttgctactaaccaatg |
40093705 |
T |
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| Q |
414 |
tcatgcatgttgcattagacaaactttgatgctccatccggcagtaatccagttgcgattgacttcacggggatgggaaaaggcgaggcttgggtaaatg |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40093706 |
tcatgcatgttgcattagacaaactttgatgctccatccggcagtaatccagttgtgattgacttcacagggatgggaaaaggcgaggcttgggtaaatg |
40093805 |
T |
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| Q |
514 |
gacaaagcattgggcgatactggcctacatatgtt |
548 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
40093806 |
gacaaagcattgggcgatactggcctacatatgtt |
40093840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 14 - 548
Target Start/End: Original strand, 40062654 - 40063209
Alignment:
| Q |
14 |
catcagaactatggagcnnnnnnngacacatggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaagactcttgatctct |
113 |
Q |
| |
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||||||||||||||||| |||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40062654 |
catcagaactatggagctttttttgacagatggggagcggggatcaccggtccagtaacattgaaaggtttgaagaatggcaacaacactcttgatctct |
40062753 |
T |
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| Q |
114 |
cctctcggaagtggacatatcaggtcagtcttcacttttgatcgaagact------------atttattagtcttac---------atagttaatggagt |
192 |
Q |
| |
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|||||| ||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||| || ||||||||||| |
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| T |
40062754 |
cctctcagaagtggacatatcaggtcagtcttaacttttgatcaaagacttgatcaaagactatttattagtcttaatggagattgattgttaatggagt |
40062853 |
T |
|
| Q |
193 |
taattcttttgatacaggttggcctaaaaggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaagactactttccctaagaaaca |
292 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||| || ||||| ||| || |||||||||||||||| || |
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| T |
40062854 |
taattctattgatacaggttggcctaaaaggtgaagatttaggtctgtccagtggaagttccgaaggttggaactcacagtctactttccctaagaatca |
40062953 |
T |
|
| Q |
293 |
accattgatttggtacaaggtaatttaattttcaatttattgtttcccttgatataagttatggaatttcaaattaaaagaacgccactatatgaaaaat |
392 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40062954 |
accattgatttggtacaaggtaattttattttcaatttattgtttccctttatataagttatggaatttcaaattaaaagaatgccactatatgaaaaat |
40063053 |
T |
|
| Q |
393 |
gttttttgctactaaccaatgtcatgcatgttgcattagacaaactttgatgctccatccggcagtaatccagttgcgattgacttcacggggatgggaa |
492 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063054 |
gttttttggtactaaccaatgtcatacatgttgcattagacaaactttgatgctccatccggcagtaatccagttgcgattgacttcacggggatgggaa |
40063153 |
T |
|
| Q |
493 |
aaggcgaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgtt |
548 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063154 |
aaggtgaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgtt |
40063209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 14 - 547
Target Start/End: Original strand, 40081003 - 40081559
Alignment:
| Q |
14 |
catcagaactatggagcnnnnnnngacacatggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaagactcttgatctct |
113 |
Q |
| |
|
||||||||||||||||| |||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40081003 |
catcagaactatggagccttttttgacacagtgggagcagggatcaccggtcccgtgatattgaaaggtttgaagaatggcaacaacactcttgatctct |
40081102 |
T |
|
| Q |
114 |
cctctcggaagtggacatatcaggtcagtcttcactttt-gatcgaagactatttattagtctt---------------------acatagttaatggag |
191 |
Q |
| |
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||||||||||||||||||||||||||| |||| | |||| ||||||| ||||||||||| |||| |||| |||||||||| |
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| T |
40081103 |
cctctcggaagtggacatatcaggtcaatcttaaatttttgatcgaaaactatttattattctttctttatcactttaatggaatacattgttaatggag |
40081202 |
T |
|
| Q |
192 |
ttaattcttttgatacaggttggcctaaaaggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaagactactttccctaagaaac |
291 |
Q |
| |
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|||||| ||| ||||||| ||||||||||||| |||||||||||||| |||||||||||||| |||| |||||||||| || |||||| ||||||||| | |
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| T |
40081203 |
ttaattttttcgatacagattggcctaaaaggcgaagatttaggtctgtctagtggaagttctggagggtggaattcacagtctacttaccctaagaacc |
40081302 |
T |
|
| Q |
292 |
aaccattgatttggtacaaggtaatttaattttcaatttattgtttcccttgatataagttatggaatttcaaattaaaagaacgccactatatgaaaaa |
391 |
Q |
| |
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|||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||| | ||||||||||||||| || |||||||||||||||| |
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| T |
40081303 |
aaccattggtttggtacaaggtagttttattttcaatttattgtttcccttgatataagtaagggaatttcaaattaaggaaatgccactatatgaaaaa |
40081402 |
T |
|
| Q |
392 |
tg-ttttttgctactaaccaatgtcatgcatgttgcattagacaaactttgatgctccatccggcagtaatccagttgcgattgacttcacggggatggg |
490 |
Q |
| |
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|| ||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40081403 |
tgtttttttgctactaaccaatgtaatacatgttgcactagacaaactttgatgctccatccggcagtaatccagttgcgattgacttcacggggatggg |
40081502 |
T |
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| Q |
491 |
aaaaggcgaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgt |
547 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40081503 |
aaaaggtgaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgt |
40081559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 429 - 544
Target Start/End: Complemental strand, 22012756 - 22012641
Alignment:
| Q |
429 |
tagacaaactttgatgctccatccggcagtaatccagttgcgattgacttcacggggatgggaaaaggcgaggcttgggtaaatggacaaagcattgggc |
528 |
Q |
| |
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||||| ||||||| |||||| ||||| ||||| || ||||| || |||||||||||||||||||||||||| |||||||| || ||||| |||||||||| |
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| T |
22012756 |
tagacgaactttgttgctccctccggaagtaacccggttgcaatcgacttcacggggatgggaaaaggcgaagcttgggtgaacggacagagcattgggc |
22012657 |
T |
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| Q |
529 |
gatactggcctacata |
544 |
Q |
| |
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|||||||||| ||||| |
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| T |
22012656 |
gatactggccaacata |
22012641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 526
Target Start/End: Complemental strand, 44356214 - 44356174
Alignment:
| Q |
486 |
atgggaaaaggcgaggcttgggtaaatggacaaagcattgg |
526 |
Q |
| |
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|||| |||||| || |||||||||||||||||||||||||| |
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| T |
44356214 |
atggcaaaaggtgaagcttgggtaaatggacaaagcattgg |
44356174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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