View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20312_low_6 (Length: 503)
Name: NF20312_low_6
Description: NF20312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20312_low_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 17 - 485
Target Start/End: Complemental strand, 29447407 - 29446939
Alignment:
| Q |
17 |
cagagatcaagtgacataaaggtgaattcccatcaacatagagacagagactggccagttttggatcagagaggaactcataagataggtcatgttgaac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29447407 |
cagagatcaagtgacataaaggtgaattcccatcaacatagagacagagactggccagttttggatcagagaggaactcataagataggtcatgttgaac |
29447308 |
T |
|
| Q |
117 |
ctttgaagaccatggttcaaccacaacttcatgaacaagaggaatcaagctcaaactcagactcttcttctcaatggacttctcagcaagacagtgccga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29447307 |
ctttgaagaccatggttcaaccacaacttcatgaacaagaggaatcaatctcaaactcagactcttcttctcaatggacttctcagcaagacagtgccga |
29447208 |
T |
|
| Q |
217 |
tgttggtagtgaatccgaggattcctccttgtcagttgggacacaaggttcaaaatcaggaaggatagttgaggcctcatatgaaggcagctcggaagag |
316 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29447207 |
tgttggtagtgtatccgagggttcctccttgtcagttgggacacaaggttcaaaatcaggaaggatagttgaggcctcatatgaaggcagctcggaagag |
29447108 |
T |
|
| Q |
317 |
agtagtgattcatatctcaataaggaaaatggccgttcacatagagttggaagttttaaaacttatggatatcacagtaaaggaaatcctaacaaaccag |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29447107 |
agtagtgattcatatctcaataaggaaaatggccgttcacatagagttggaagttttaaaacttatggatatcacagtaaaggaaatcctaacaaaccag |
29447008 |
T |
|
| Q |
417 |
ttggaggcctaaagagactgaaaaataagttgggactaatctttcaccaccaccatcatcatcaccatc |
485 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29447007 |
ttggaggcctaaagagactgaaaaataagttgggactaatctttcaccaccaccatcatcatcaccatc |
29446939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University