View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20312_low_8 (Length: 473)
Name: NF20312_low_8
Description: NF20312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20312_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 19 - 426
Target Start/End: Original strand, 45403075 - 45403482
Alignment:
| Q |
19 |
ttctttatgttgtatgtagtattataaaatcaacctttctatctcttcatgtgtaataaaatcacttctagtacctatccccatttttcaacccctcatt |
118 |
Q |
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| T |
45403075 |
ttctttatgttgtatgtagtattataaaatcaacctttctatctcttcatgtgtaataaaatcacttctagtacctatccccatttttcaacccctcatt |
45403174 |
T |
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| Q |
119 |
catttcattgtctttgatgcaaagataaatataaatagttaccccacaacacaagcatgtcacttttggaatttatacaatttaagtacatctctaggat |
218 |
Q |
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| T |
45403175 |
catttcattgtctttgatgcaaagataaatataaatagttaccccacaacacaagcatgtcacttttggaatttatacaatttaagtacatctctaggat |
45403274 |
T |
|
| Q |
219 |
gcaagatctgatcaaagtgggtgaaaataacacaactgtatacactacacaaaatttgttagaatttattcctttagtatctaagagaagttccaagtag |
318 |
Q |
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| T |
45403275 |
gcaagatctgatcaaagtgggtgaaaataacacaactgtatacactacacaaaatttgttagaatttattcctttagtatctaagagaagttccaagtag |
45403374 |
T |
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| Q |
319 |
acatctcagttagtttcacagttcaaacactgacaactaacattaccactaatagtcatgcacaaattatgaactaagtaccaatatcaatataacacac |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
45403375 |
acatctcagttagtttcacagttcaaacactgacaactaacattaccactaatagtcatgcacaaattatgaactaagtaccaatatcaatataacatac |
45403474 |
T |
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| Q |
419 |
agaatccc |
426 |
Q |
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| T |
45403475 |
agaatccc |
45403482 |
T |
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