View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20313_high_11 (Length: 290)
Name: NF20313_high_11
Description: NF20313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20313_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 4e-81; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 116 - 276
Target Start/End: Complemental strand, 11225687 - 11225527
Alignment:
| Q |
116 |
ttaaaaaatgggtgtgtcaaattttaatttttgtgctcatgtgccatgtccttcgttaatattttcgatccatgcttgttagcgtttgatctgaaataaa |
215 |
Q |
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| T |
11225687 |
ttaaaaaatgggtgtgtcaaattttaatttttgtgctcatgtgtcatgtccttcgttaatattttcgatccatgcttgttagcgtttgatctgaaataaa |
11225588 |
T |
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| Q |
216 |
attttgatgcgaaacattttagatatttgagacttttgtcaagtgccaaactgttattttt |
276 |
Q |
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| T |
11225587 |
attttgatgcgaaacattttagatatttgagatttttgtcaagtgccaaactgttattttt |
11225527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 11240477 - 11240373
Alignment:
| Q |
12 |
attctccattcattataaatttacaaaatacacttgcattatcatataaaagtataaccatatactcatatccacttatgttcaaataaagcacataatc |
111 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11240477 |
attctccattcattataaatttacaaaatacactagcattatcatataaaagtataaccatatactcatatccacttatgttcaaataaagcacataatc |
11240378 |
T |
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| Q |
112 |
cacat |
116 |
Q |
| |
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||||| |
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| T |
11240377 |
cacat |
11240373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 11240734 - 11240630
Alignment:
| Q |
12 |
attctccattcattataaatttacaaaatacacttgcattatcatataaaagtataaccatatactcatatccacttatgttcaaataaagcacataatc |
111 |
Q |
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||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11240734 |
attctccattcatcataaatcaacaaaatacactagcattatcatataaaagtataaccatatactcatatccacttatgttcaaataaagcacataatc |
11240635 |
T |
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| Q |
112 |
cacat |
116 |
Q |
| |
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||||| |
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| T |
11240634 |
cacat |
11240630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 11864409 - 11864305
Alignment:
| Q |
12 |
attctccattcattataaatttacaaaatacacttgcattatcatataaaagtataaccatatactcatatccacttatgttcaaataaagcacataatc |
111 |
Q |
| |
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||||||||||||| |||||| |||| |||||| |||| ||||| |||||||||||||||| ||| || |||| ||| |||| ||||||||||||||| |
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| T |
11864409 |
attctccattcatcataaatcatcaaattacactagcatcatcatttaaaagtataaccatagacttatctccatctatattcacataaagcacataatc |
11864310 |
T |
|
| Q |
112 |
cacat |
116 |
Q |
| |
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||||| |
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|
| T |
11864309 |
cacat |
11864305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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