View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20313_high_2 (Length: 448)
Name: NF20313_high_2
Description: NF20313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20313_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 7064341 - 7064774
Alignment:
| Q |
1 |
gtcagttttagagagtttttctatgggctctatgatttggtaagcaactatgatgaaaaaagtcacaatgattcacatcattctgatcattcaatggatg |
100 |
Q |
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| T |
7064341 |
gtcagttttagagagtttttctatgggctctatgatttggtaagcaactatgatgaaaaaagtcacaatgattcacatcattctgatcattcaatggatg |
7064440 |
T |
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| Q |
101 |
cttcagctaaggttttgttttctcagcttgacaaagattttgacgggtatttacctttctttgtgtcaatatatagtagtttcctctatagcacactatc |
200 |
Q |
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| T |
7064441 |
cttcagctaaggttttgttttctcagcttgacaaagattttgacgggtatttacctttctttgtgtcaatatatagtagtttcctctatagcacactatc |
7064540 |
T |
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| Q |
201 |
cattttttcttatgggttttgatttcaatatgttgcaggtatttgtccgatattgaactgttgcctataattgggaaagttcatccatctggacattatt |
300 |
Q |
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| T |
7064541 |
cattttttcttatgggttttgatttcaatatgttgcaggtatttgtccgatattgaactgttgcctataattgggaaagttcatccatctggacattatt |
7064640 |
T |
|
| Q |
301 |
atgcaacaaaacaagcagaatacttaatgtcacaggtattgattttaacattaccataattacactgtagttgttgacaaaggtgtcattcctttcttac |
400 |
Q |
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| T |
7064641 |
atgcaacaaaacaggcagaatacttaatgtcacaggtattgattttaacattaccataattacactgtagttgttgacaaaggtgtcattcctttcttac |
7064740 |
T |
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| Q |
401 |
aaagtcgtctgaacttgtgaatgatcgttgttat |
434 |
Q |
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| T |
7064741 |
aaagtcgtctgaacttgtgaatgatcgttgttat |
7064774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 51814956 - 51815098
Alignment:
| Q |
16 |
tttttctatgggctctatgatttggtaagcaactatgatgaaaaaagtcacaatgattcacatcattctgatcattcaatggatgcttcagctaaggttt |
115 |
Q |
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| T |
51814956 |
tttttccatgggctctttgatttggtaagaaactatgacgaagaaagtcacaatgactcccatcattctgataattcattggatgctccagctagaaaat |
51815055 |
T |
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| Q |
116 |
tgttttctcagcttgacaaagattttgacgggtatttaccttt |
158 |
Q |
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| T |
51815056 |
tgtttgctcagcttgaccaagatggtgatgggtattttccttt |
51815098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 341
Target Start/End: Original strand, 51815202 - 51815294
Alignment:
| Q |
249 |
gatattgaactgttgcctataattgggaaagttcatccatctggacattattatgcaacaaaacaagcagaatacttaatgtcacaggtattg |
341 |
Q |
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| T |
51815202 |
gatattgaactactgcctataattgggaaactccatccgtccgagcattattatgcaaagcaacaatcagaatatatcatttcacaggtattg |
51815294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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