View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20313_high_9 (Length: 312)
Name: NF20313_high_9
Description: NF20313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20313_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 34182150 - 34181853
Alignment:
| Q |
1 |
cctattgagtgacccttcatccttcaaacgtgcttgcaattgaacaacctacatatatgaaataaaggaaagccacattatagtcaccattaatnnnnnn |
100 |
Q |
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||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34182150 |
cctattgagtgactcttcatccttcaaccgtgcttgcaattgaacaacctacatatatgaaataaaggaaagccacattatagtcaccattaataaaaaa |
34182051 |
T |
|
| Q |
101 |
nntggttcatacttgaatagaactttgaggttagttaatnnnnnnnnttgttacaaaacataagcannnnnnnaaatgatgccaaatgatggatgctagc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34182050 |
a-tggttcatacttgaatagaactttgaggttagttaataaaaaaa-ttgttacaaaacataagcacccccccaaatgatgccaaatgatggatgctagc |
34181953 |
T |
|
| Q |
201 |
tattgaagaatttacacacctcattttcaagttcttgtctcttttgtggctcttgacctttctccatgagatagtcttcgaatttcatttgcctttgcct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34181952 |
tattgaagaatttacacacctcattttcaagttcttgtctcttttgtggctcttggcttttctccatgagatagtcttcgaatttcatttgcctttgcct |
34181853 |
T |
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