View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20313_low_1 (Length: 634)
Name: NF20313_low_1
Description: NF20313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20313_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 292 - 621
Target Start/End: Original strand, 42038845 - 42039174
Alignment:
| Q |
292 |
cttagtcagtgtgatactgaacatgtaccgattctttgtcacacatcaatcataataatatcatattagtattaatttaacatatagaatgtgattgatt |
391 |
Q |
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| T |
42038845 |
cttagtcactgtgatactgaacatgtaccgattctttgtcacacatcaatcataataatatcatattagtattaatttaacatatagaatgtgattgatt |
42038944 |
T |
|
| Q |
392 |
gtgcagcttactttgttgatggctatgatattggcaagttcacaatgaaggttgttgatgatgaaagaacaatcaacaaaagtgttcattttcgaccctc |
491 |
Q |
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| T |
42038945 |
gtgcagcgtactttgttgatggctatgatattggcaagttcacaatgaaggttgttgatgatgaaagaacaatcaacaaaagtgttcattttcgaccctc |
42039044 |
T |
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| Q |
492 |
taccaactgttacagcatgaatgagcttgcttctttgtgggaaaataaaattgctcaaaaaattcctagagcaatcatatctgaagacgatcttctagga |
591 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
42039045 |
taccaactgttacagcatgaatgagcttgcttctttgtgggaaaataaaattgctcgaaaaattcctagagcaatcgtctctgaagacgatcttctagga |
42039144 |
T |
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| Q |
592 |
atagccgcaggttccatcctactcttaata |
621 |
Q |
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| T |
42039145 |
atagccgcaggttccatcctactcttaata |
42039174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 5 - 319
Target Start/End: Original strand, 42038526 - 42038840
Alignment:
| Q |
5 |
gagcagaacctgtggagccaggcctagcaatgtacaaacagaaacgtttggttagacgtgtgattgaggaatcaggtgtaccatacacctacatctgctg |
104 |
Q |
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| T |
42038526 |
gagcagatcctgtggagccaggccttgcaatgtacaaacagaaacgtttggttagacgtgtgattgaggaatcaggtgtaccatacacctacatctgctg |
42038625 |
T |
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| Q |
105 |
caactccattgcatcttggccatactatgacaattgtcatccatcacagcttcctccaccgttggatcaattgcacatctatggtcatggcaatgtcaaa |
204 |
Q |
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| T |
42038626 |
caactccattgcatcttggccatactatgacaattgtcatccatcacagcttcctccaccgttggatcaattgcacatctatggtcatggcaatgtcaaa |
42038725 |
T |
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| Q |
205 |
ggtacaaccacactaagtacgtgtctgatatcacggtggttttgccagaatcacgttgagcccatgtgattgtggcaaagtcactcacttagtcagtgtg |
304 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| || | |
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| T |
42038726 |
ggtacaaccacactaagtacgtgtctgatatcacagtggttttgccagaatcacgttgagccgatgtgattgtggcaaagtcactgacttagtcactggg |
42038825 |
T |
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| Q |
305 |
atactgaacatgtac |
319 |
Q |
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||||||||||||||| |
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| T |
42038826 |
atactgaacatgtac |
42038840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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