View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20313_low_11 (Length: 307)

Name: NF20313_low_11
Description: NF20313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20313_low_11
NF20313_low_11
[»] chr2 (15 HSPs)
chr2 (6-151)||(11147699-11147845)
chr2 (171-301)||(12676438-12676568)
chr2 (188-286)||(31967442-31967540)
chr2 (175-304)||(19206418-19206547)
chr2 (193-301)||(8940056-8940163)
chr2 (175-223)||(29926885-29926933)
chr2 (254-301)||(28684190-28684237)
chr2 (175-221)||(13478769-13478815)
chr2 (171-289)||(15301518-15301635)
chr2 (233-262)||(11147894-11147923)
chr2 (243-304)||(15816904-15816965)
chr2 (175-224)||(20966212-20966261)
chr2 (184-289)||(21603481-21603586)
chr2 (157-200)||(1517582-1517626)
chr2 (182-286)||(7165632-7165736)
[»] chr4 (25 HSPs)
chr4 (175-293)||(8170888-8171006)
chr4 (182-293)||(3534150-3534261)
chr4 (175-290)||(48973333-48973448)
chr4 (151-307)||(971881-972036)
chr4 (182-257)||(37197547-37197622)
chr4 (157-291)||(39331095-39331229)
chr4 (195-275)||(4161828-4161908)
chr4 (175-286)||(13834388-13834499)
chr4 (175-293)||(51234390-51234508)
chr4 (175-275)||(8755909-8756009)
chr4 (202-286)||(47097417-47097501)
chr4 (183-286)||(312695-312798)
chr4 (183-286)||(6552521-6552624)
chr4 (183-286)||(6552921-6553024)
chr4 (174-289)||(24806661-24806775)
chr4 (156-236)||(35896069-35896150)
chr4 (174-246)||(7912538-7912610)
chr4 (175-291)||(52700920-52701036)
chr4 (175-286)||(51150901-51151012)
chr4 (175-225)||(8170760-8170810)
chr4 (171-289)||(11839825-11839943)
chr4 (175-293)||(27395479-27395597)
chr4 (208-286)||(45615718-45615796)
chr4 (151-202)||(12922202-12922254)
chr4 (175-275)||(32934085-32934185)
[»] chr8 (15 HSPs)
chr8 (175-287)||(21600463-21600575)
chr8 (156-288)||(7603934-7604067)
chr8 (171-300)||(33508602-33508731)
chr8 (175-307)||(2986941-2987072)
chr8 (182-302)||(42659871-42659991)
chr8 (174-301)||(41616701-41616828)
chr8 (156-275)||(21215939-21216055)
chr8 (171-275)||(6393839-6393943)
chr8 (208-304)||(21145463-21145559)
chr8 (148-257)||(42844865-42844975)
chr8 (175-236)||(7680994-7681055)
chr8 (183-286)||(36754636-36754739)
chr8 (175-289)||(13002958-13003072)
chr8 (193-289)||(34949105-34949201)
chr8 (272-304)||(44362539-44362571)
[»] chr7 (10 HSPs)
chr7 (171-307)||(10228757-10228893)
chr7 (171-304)||(32996294-32996427)
chr7 (175-275)||(24325399-24325502)
chr7 (175-275)||(38838526-38838626)
chr7 (182-246)||(26910102-26910168)
chr7 (195-304)||(41870534-41870644)
chr7 (225-291)||(49078147-49078213)
chr7 (156-235)||(23441494-23441574)
chr7 (175-307)||(27376284-27376415)
chr7 (173-293)||(40354997-40355117)
[»] chr3 (18 HSPs)
chr3 (171-291)||(34979105-34979225)
chr3 (157-303)||(46008567-46008714)
chr3 (155-293)||(45681162-45681301)
chr3 (175-304)||(20948225-20948351)
chr3 (171-289)||(14984463-14984581)
chr3 (156-293)||(23195649-23195787)
chr3 (175-275)||(21568362-21568462)
chr3 (230-304)||(30843655-30843729)
chr3 (156-304)||(1183133-1183282)
chr3 (175-293)||(14194850-14194968)
chr3 (156-274)||(12832219-12832338)
chr3 (174-257)||(47199924-47200007)
chr3 (195-304)||(43908681-43908790)
chr3 (171-216)||(47944340-47944385)
chr3 (218-246)||(36080626-36080654)
chr3 (175-307)||(39336696-39336828)
chr3 (175-223)||(43838820-43838868)
chr3 (174-222)||(47944547-47944595)
[»] scaffold0687 (1 HSPs)
scaffold0687 (156-288)||(1618-1751)
[»] chr5 (12 HSPs)
chr5 (175-275)||(23159090-23159190)
chr5 (170-252)||(12403265-12403347)
chr5 (225-307)||(26675115-26675196)
chr5 (225-307)||(26946723-26946804)
chr5 (182-301)||(27001184-27001303)
chr5 (171-296)||(917082-917207)
chr5 (210-289)||(7313980-7314059)
chr5 (211-273)||(1041858-1041920)
chr5 (191-275)||(4658392-4658476)
chr5 (192-296)||(37181239-37181343)
chr5 (182-255)||(22579319-22579392)
chr5 (182-258)||(39194868-39194944)
[»] scaffold0211 (1 HSPs)
scaffold0211 (183-286)||(20053-20156)
[»] chr6 (11 HSPs)
chr6 (174-293)||(9307391-9307509)
chr6 (175-307)||(33550997-33551130)
chr6 (175-275)||(21021038-21021138)
chr6 (172-307)||(10219595-10219725)
chr6 (212-293)||(16431584-16431665)
chr6 (194-286)||(17848762-17848854)
chr6 (182-257)||(7515596-7515671)
chr6 (183-286)||(21237273-21237376)
chr6 (195-257)||(7954811-7954873)
chr6 (175-256)||(4964252-4964333)
chr6 (252-304)||(23887629-23887681)
[»] chr1 (15 HSPs)
chr1 (151-304)||(33747305-33747459)
chr1 (230-304)||(34826978-34827052)
chr1 (229-301)||(6541119-6541191)
chr1 (183-286)||(49880163-49880266)
chr1 (182-304)||(26515139-26515260)
chr1 (175-293)||(32743257-32743375)
chr1 (156-245)||(35684864-35684954)
chr1 (156-240)||(34177465-34177550)
chr1 (193-246)||(50155749-50155802)
chr1 (229-301)||(5043414-5043486)
chr1 (208-307)||(8984017-8984116)
chr1 (233-298)||(33747839-33747904)
chr1 (183-275)||(9890589-9890681)
chr1 (252-304)||(35621472-35621524)
chr1 (208-304)||(36144966-36145062)
[»] scaffold0284 (1 HSPs)
scaffold0284 (194-286)||(2447-2539)
[»] scaffold0114 (1 HSPs)
scaffold0114 (183-282)||(35029-35128)


Alignment Details
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 151
Target Start/End: Original strand, 11147699 - 11147845
Alignment:
Q  6 aggagcagagagggatgagaatgagggagaa-tgcttattatagattaatgatcaaatcaagaaaggagaaaaagaaatgcttaacaagattaannnnnn 104  Q
    |||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| || | ||||||  |||||||||||||||||||          
T  11147699 aggaccagggagggatgagaatgagggagaaatgcttattatagattaatgatcaaatcaacaacgaagaaaagaaaatgcttaacaagattaattattt 11147798  T
Q  105 nnnnnnnacaaacgttcaattaaattattaaaaatgtatacgtttgg 151  Q
           |||||||||| |||||||||||||||||||||||||||||    
T  11147799 tctttttacaaacgttcgattaaattattaaaaatgtatacgtttgg 11147845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 171 - 301
Target Start/End: Original strand, 12676438 - 12676568
Alignment:
Q  171 atcgaaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaata 270  Q
    |||||||| | |||||||||| |||||||||| ||  ||||||||| || | ||| |  ||||||||||| ||||| ||| ||||||| |||| | ||||    
T  12676438 atcgaaatgttaaaatagtctatgattgtgcacttagttagtcaaaataatttctgacgttaaaatgttttattaatattgtcatattagtccctcaata 12676537  T
Q  271 tacttgtttattgtcatatcagtttttataa 301  Q
    ||||| | ||||||||||||||| |||||||    
T  12676538 tacttatctattgtcatatcagtatttataa 12676568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 286
Target Start/End: Original strand, 31967442 - 31967540
Alignment:
Q  188 gtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatacttgtttattgtca 286  Q
    |||| ||||||| || ||||||||||||| ||||| |||| ||| ||||  |||||| | ||| ||||||| |||||| ||||||||| |||| |||||    
T  31967442 gtctctgattgtacacttcattagtcaaaatagtccctaacattcaaatacttcattgatattgtcatattagtccttcaatatacttttttactgtca 31967540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 304
Target Start/End: Complemental strand, 19206547 - 19206418
Alignment:
Q  175 aaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatact 274  Q
    |||||| |||||||| | ||||| |||| ||  ||||||||| || ||||| || |||| |||| | ||||| ||| || |||| |||||| |||||| |    
T  19206547 aaattttaaaatagtttctgattatgcactttgttagtcaaaatattctctgatgttaagatgtattattaatattgtcttattagtccttcaatatatt 19206448  T
Q  275 tgtttattgtcatatcagtttttataagta 304  Q
    |  ||||||||||| ||||| |||||||||    
T  19206447 tacttattgtcatagcagttcttataagta 19206418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 301
Target Start/End: Complemental strand, 8940163 - 8940056
Alignment:
Q  193 tgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatacttgtttattgtcatatcag 292  Q
    ||||||||||| |||||||||||| || | ||| |||||||||| ||| ||||| ||| ||||||| ||| || ||||||| |  || ||||||||  ||    
T  8940163 tgattgtgcatatcattagtcaaaataat-tctgatattaaaatatttaattaatattgtcatattagtcattcaatatacatacttgttgtcatacaag 8940065  T
Q  293 tttttataa 301  Q
    |||||||||    
T  8940064 tttttataa 8940056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 29926933 - 29926885
Alignment:
Q  175 aaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtct 223  Q
    |||||| |||||||||  |||||||||||||||||||||||| ||||||    
T  29926933 aaattttaaaatagtcaatgattgtgcatttcattagtcaaaatagtct 29926885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 301
Target Start/End: Complemental strand, 28684237 - 28684190
Alignment:
Q  254 atatttgtcctttaatatacttgtttattgtcatatcagtttttataa 301  Q
    ||||| |||||| ||||||||| |||||||| ||||||||||||||||    
T  28684237 atattagtccttcaatatacttatttattgttatatcagtttttataa 28684190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 13478815 - 13478769
Alignment:
Q  175 aaatttgaaaatagtctttgattgtgcatttcattagtcaaattagt 221  Q
    |||||| |||||||| ||||||||||||||| |||||||||| ||||    
T  13478815 aaattttaaaatagtttttgattgtgcattttattagtcaaaatagt 13478769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 289
Target Start/End: Complemental strand, 15301635 - 15301518
Alignment:
Q  171 atcgaaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaata 270  Q
    |||||||||| |||||| ||| |||||||||||||   |||||||| |||||||| | ||||||||  ||| |||| ||| || |||| || ||| ||||    
T  15301635 atcgaaatttcaaaataatctctgattgtgcattt-tctagtcaaaatagtctctgacattaaaatacttcgttaatattgtcttattagtacttcaata 15301537  T
Q  271 tacttgtttattgtcatat 289  Q
    |||||  ||||| ||||||    
T  15301536 tacttacttattatcatat 15301518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 262
Target Start/End: Original strand, 11147894 - 11147923
Alignment:
Q  233 aaatgtttcattaacattatcatatttgtc 262  Q
    ||||||||||||||||||||||||||||||    
T  11147894 aaatgtttcattaacattatcatatttgtc 11147923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 304
Target Start/End: Original strand, 15816904 - 15816965
Alignment:
Q  243 ttaacattatcatatttgtcctttaatatacttgtttattgtcatatcagtttttataagta 304  Q
    |||| ||| ||||||| |||||| || ||||||  ||||| |||||||||||||||||||||    
T  15816904 ttaatattgtcatattagtccttcaagatacttacttattttcatatcagtttttataagta 15816965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 20966261 - 20966212
Alignment:
Q  175 aaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctc 224  Q
    |||||| ||||||||||||||||||||| ||  ||||||||| |||||||    
T  20966261 aaattttaaaatagtctttgattgtgcactttgttagtcaaaatagtctc 20966212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 289
Target Start/End: Original strand, 21603481 - 21603586
Alignment:
Q  184 aatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatacttgtttattg 283  Q
    ||||||| ||| ||||||| ||  ||||||||| |||||| | |||||||||| |||| |||| ||| |||| || || ||| |||| ||||  ||||||    
T  21603481 aatagtccttggttgtgcactttgttagtcaaaatagtctttgatattaaaatatttcgttaatattgtcatgttagttcttcaatagacttagttattg 21603580  T
Q  284 tcatat 289  Q
    ||||||    
T  21603581 tcatat 21603586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 200
Target Start/End: Original strand, 1517582 - 1517626
Alignment:
Q  157 atagtctttcaatg-atcgaaatttgaaaatagtctttgattgtg 200  Q
    |||||| ||||||| |||||||||| |||||||||||||||||||    
T  1517582 atagtccttcaatgtatcgaaattttaaaatagtctttgattgtg 1517626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 286
Target Start/End: Original strand, 7165632 - 7165736
Alignment:
Q  182 aaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatacttgtttat 281  Q
    ||||||||  ||||||||||| || |||||||||| |||||  ||| ||||||||  ||  |||| ||| ||||||| ||| || |||||||||  ||||    
T  7165632 aaaatagttcttgattgtgcactttattagtcaaaatagtccttaacattaaaataatttgttaatattttcatattagtctttcaatatacttacttat 7165731  T
Q  282 tgtca 286  Q
    |||||    
T  7165732 tgtca 7165736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 175 - 293
Target Start/End: Complemental strand, 8171006 - 8170888
Alignment:
Q  175 aaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatact 274  Q
    |||||| |||||||||| ||||| |||| ||| ||||||||| || |||||||||||||||||||||||||| ||| ||||||| || ||| ||||||||    
T  8171006 aaatttcaaaatagtctctgattttgcaattcgttagtcaaaataatctctaatattaaaatgtttcattaatattgtcatattagtacttcaatatact 8170907  T
Q  275 tgtttattgtcatatcagt 293  Q
    |  ||||||||||||||||    
T  8170906 tacttattgtcatatcagt 8170888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 293
Target Start/End: Complemental strand, 3534261 - 3534150
Alignment:
Q  182 aaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatacttgtttat 281  Q
    ||||||||| ||||||||||| ||| ||||||||| |||| ||  || ||||||| ||||||||| ||| | ||||| ||||||||||||||||   |||    
T  3534261 aaaatagtcgttgattgtgcaattcgttagtcaaaatagtttcagatgttaaaatatttcattaatatttttatattagtcctttaatatacttacatat 3534162  T
Q  282 tgtcatatcagt 293  Q
    ||||||||||||    
T  3534161 tgtcatatcagt 3534150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 290
Target Start/End: Complemental strand, 48973448 - 48973333
Alignment:
Q  175 aaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatact 274  Q
    |||||| ||||||||| ||||||||||| ||||||| ||||| ||||   | || |||||||| |||||||| ||| ||||||| |||||| ||||||||    
T  48973448 aaatttcaaaatagtccttgattgtgcaattcattaatcaaaatagttcttgatgttaaaatgcttcattaatattgtcatattagtccttcaatatact 48973349  T
Q  275 tgtttattgtcatatc 290  Q
    |  |||||||||||||    
T  48973348 tacttattgtcatatc 48973333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 151 - 307
Target Start/End: Original strand, 971881 - 972036
Alignment:
Q  151 gtcaaaatagtctttcaatg-atcgaaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacat 249  Q
    |||| ||||||| ||||||| ||| |||||| ||||||||||||||||||||| ||  ||||||||| |||||| | |||||  ||||||||||||| ||    
T  971881 gtcacaatagtcattcaatgtatcaaaatttcaaaatagtctttgattgtgcactttgttagtcaaagtagtctatgatatt--aatgtttcattaatat 971978  T
Q  250 tatcatatttgtcctttaatatacttgtttattgtcatatcagtttttataagtattt 307  Q
    | |||||||  || || ||||||| |  ||||||| ||||||||  || |||||||||    
T  971979 tgtcatattaatcattcaatatacatacttattgtaatatcagtccttgtaagtattt 972036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 37197622 - 37197547
Alignment:
Q  182 aaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatat 257  Q
    ||||||||| ||||||| ||||||| ||||||||| |||||| |||||||||||||||| ||||| ||| ||||||    
T  37197622 aaaatagtccttgattgggcatttcgttagtcaaaatagtctttaatattaaaatgtttgattaatattgtcatat 37197547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 291
Target Start/End: Complemental strand, 39331229 - 39331095
Alignment:
Q  157 atagtctttcaatg-atcgaaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcat 255  Q
    ||||||||| |||| || ||||||| |||||||| |||||||||||| ||| || ||||||| ||||  | ||||||||||| |||||||| ||| | ||    
T  39331229 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaat-agtccatgatattaaaatgcttcattaatattgttat 39331131  T
Q  256 atttgtcctttaatatacttgtttattgtcatatca 291  Q
    ||  ||| || ||||||||| |||||||||||||||    
T  39331130 atcagtctttcaatatacttatttattgtcatatca 39331095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 275
Target Start/End: Complemental strand, 4161908 - 4161828
Alignment:
Q  195 attgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatactt 275  Q
    |||||||||||  ||||||||| |||||| | |||||||||||||||||||| ||| ||||||| || ||| |||||||||    
T  4161908 attgtgcattttgttagtcaaaatagtctatgatattaaaatgtttcattaatattgtcatattagttcttcaatatactt 4161828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 286
Target Start/End: Original strand, 13834388 - 13834499
Alignment:
Q  175 aaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatact 274  Q
    |||||| ||||||||| ||||||||||| ||  ||||||||| |||||| ||| ||||||||  ||  |||| ||| ||||||| |||||| ||||||||    
T  13834388 aaattttaaaatagtccttgattgtgcactttgttagtcaaaatagtctttaacattaaaataatttgttaatattgtcatattagtccttcaatatact 13834487  T
Q  275 tgtttattgtca 286  Q
    |  |||||||||    
T  13834488 tacttattgtca 13834499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 293
Target Start/End: Complemental strand, 51234508 - 51234390
Alignment:
Q  175 aaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatact 274  Q
    |||||| |||||||||| | | | |||||||| ||||||||| |||||||| || ||||||||||| ||||| ||| |||||||   | || ||||||||    
T  51234508 aaattttaaaatagtctctaactatgcatttcgttagtcaaaatagtctctgatgttaaaatgttttattaatattgtcatattaaactttcaatatact 51234409  T
Q  275 tgtttattgtcatatcagt 293  Q
    |  |||||||||| |||||    
T  51234408 tacttattgtcatttcagt 51234390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 275
Target Start/End: Complemental strand, 8756009 - 8755909
Alignment:
Q  175 aaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatact 274  Q
    |||||| |||||| || |||||| |||| ||| ||| ||||| |||||||||| ||||||||  ||| |||| ||| |||||||  ||||||||||||||    
T  8756009 aaattttaaaataatcattgattatgcacttcgttaatcaaaatagtctctaacattaaaatacttcgttaatattgtcatattaatcctttaatatact 8755910  T
Q  275 t 275  Q
    |    
T  8755909 t 8755909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 202 - 286
Target Start/End: Complemental strand, 47097501 - 47097417
Alignment:
Q  202 atttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatacttgtttattgtca 286  Q
    ||||| ||||||||| |||||| ||| | ||||||  || ||||| ||| ||||||| |||||||||||||||| ||||||||||    
T  47097501 atttcgttagtcaaaatagtctttaacactaaaatactttattaatattgtcatattagtcctttaatatacttatttattgtca 47097417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 286
Target Start/End: Complemental strand, 312798 - 312695
Alignment:
Q  183 aaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatacttgtttatt 282  Q
    |||| |||| ||||||  || ||||||||||||| ||||| |||| ||| ||||  |||||| | ||| ||||||| |||||| ||||||||| ||||||    
T  312798 aaattgtctctgattgcacacttcattagtcaaaatagtccctaacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatt 312699  T
Q  283 gtca 286  Q
    ||||    
T  312698 gtca 312695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 286
Target Start/End: Complemental strand, 6552624 - 6552521
Alignment:
Q  183 aaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatacttgtttatt 282  Q
    |||| |||| ||||||| || ||||||||||||| ||||| |||| ||| ||||  |||||| | ||| ||| ||| |||||| ||||||||| ||||||    
T  6552624 aaattgtctctgattgtacacttcattagtcaaaatagtccctaacattcaaatacttcattgatattgtcacattagtccttcaatatacttatttatt 6552525  T
Q  283 gtca 286  Q
    ||||    
T  6552524 gtca 6552521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 286
Target Start/End: Complemental strand, 6553024 - 6552921
Alignment:
Q  183 aaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatacttgtttatt 282  Q
    |||| |||| ||||||| || ||||||||||||| |||||||||| ||| ||||  |||||| | ||| ||  ||| |||||| ||||||||| ||||||    
T  6553024 aaattgtctctgattgtacacttcattagtcaaaatagtctctaacattcaaatacttcattgatattgtctcattagtccttcaatatacttatttatt 6552925  T
Q  283 gtca 286  Q
    ||||    
T  6552924 gtca 6552921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 289
Target Start/End: Complemental strand, 24806775 - 24806661
Alignment:
Q  174 gaaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatac 273  Q
    ||||||||||||||||| || ||| || ||||||||||||||| |||||||||| ||||||||  ||  |||| ||| ||||| | ||  || |||||||    
T  24806775 gaaatttgaaaatagtcctt-attatgtatttcattagtcaaaatagtctctaacattaaaataatttgttaatattgtcatagtagtttttcaatatac 24806677  T
Q  274 ttgtttattgtcatat 289  Q
    ||  ||||||||||||    
T  24806676 ttacttattgtcatat 24806661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 35896150 - 35896069
Alignment:
Q  156 aatagtctttcaatg-atcgaaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaat 236  Q
    |||||||||| |||| |||||||||  ||||||||| || || ||||||| || |||||||| ||||||||||| |||||||    
T  35896150 aatagtcttttaatgtatcgaaattctaaaatagtcatttatcgtgcattacactagtcaaaatagtctctaatgttaaaat 35896069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 246
Target Start/End: Original strand, 7912538 - 7912610
Alignment:
Q  174 gaaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaa 246  Q
    |||||||  ||||||||| | |||||||| |||| |||||||| ||||| || ||||||||||| ||||||||    
T  7912538 gaaattttgaaatagtctctaattgtgcacttcactagtcaaaatagtccctcatattaaaatgcttcattaa 7912610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 291
Target Start/End: Complemental strand, 52701036 - 52700920
Alignment:
Q  175 aaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatact 274  Q
    |||||| |||||||||| || ||||||| ||| ||| ||||| |||||| | || ||||||||||| ||||| ||| |||||   |||||| |||||||     
T  52701036 aaattttaaaatagtctatgtttgtgcacttctttaatcaaaatagtctttcatgttaaaatgttttattaatattgtcataacagtccttcaatataca 52700937  T
Q  275 tgtttattgtcatatca 291  Q
    |  ||||| ||||||||    
T  52700936 taattattatcatatca 52700920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 286
Target Start/End: Original strand, 51150901 - 51151012
Alignment:
Q  175 aaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatact 274  Q
    |||||| ||||||||   |||||||||||||  ||||| ||| ||||| |||| |||||||| |||  |||| ||| ||||||| || ||| ||||||||    
T  51150901 aaattttaaaatagttcgtgattgtgcattttgttagtgaaaatagtccctaacattaaaatattttgttaatattgtcatattagtacttcaatatact 51151000  T
Q  275 tgtttattgtca 286  Q
    |  |||||||||    
T  51151001 tacttattgtca 51151012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 8170760 - 8170810
Alignment:
Q  175 aaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctct 225  Q
    |||||| ||||||||||||||||||||| ||  ||||||||| ||||||||    
T  8170760 aaatttcaaaatagtctttgattgtgcactttgttagtcaaaatagtctct 8170810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 289
Target Start/End: Original strand, 11839825 - 11839943
Alignment:
Q  171 atcgaaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaata 270  Q
    |||||||||| |||||||||   |||||||||  || ||||||||| |||||  | | ||||||||  ||| |||| ||| ||||||| |||||| ||||    
T  11839825 atcgaaatttcaaaatagtcccagattgtgcacctcgttagtcaaaatagtccttgacattaaaatacttcgttaatattgtcatattagtccttcaata 11839924  T
Q  271 tacttgtttattgtcatat 289  Q
     ||||  ||||||||||||    
T  11839925 cacttacttattgtcatat 11839943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 293
Target Start/End: Original strand, 27395479 - 27395597
Alignment:
Q  175 aaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatact 274  Q
    |||||| |||||| | ||||||||| || ||| ||||||||| || ||  | ||||||||||||| | |||| ||| | ||||  |||||| || |||||    
T  27395479 aaattttaaaataatatttgattgttcacttcgttagtcaaaataatccttgatattaaaatgttacgttaatattgttatatcggtccttcaacatact 27395578  T
Q  275 tgtttattgtcatatcagt 293  Q
    | ||||||||||| |||||    
T  27395579 tatttattgtcatttcagt 27395597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 286
Target Start/End: Complemental strand, 45615796 - 45615718
Alignment:
Q  208 ttagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatacttgtttattgtca 286  Q
    ||||||||| |||||||||||||||||||  ||  |||| ||| |||| || |||||| |||||||||  |||||||||    
T  45615796 ttagtcaaaatagtctctaatattaaaataatttgttaatattgtcattttagtccttcaatatacttacttattgtca 45615718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 202
Target Start/End: Original strand, 12922202 - 12922254
Alignment:
Q  151 gtcaaaatagtctttcaatg-atcgaaatttgaaaatagtctttgattgtgca 202  Q
    |||| |||||| |||||||| |||||||||| |||||||| ||||||||||||    
T  12922202 gtcacaatagtatttcaatgtatcgaaatttcaaaatagtttttgattgtgca 12922254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 275
Target Start/End: Complemental strand, 32934185 - 32934085
Alignment:
Q  175 aaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatact 274  Q
    |||||| |||||||| |||||||||||| ||   |||||||| |||| ||||| ||||||||  ||  |||| ||| ||| ||| ||| |||||||||||    
T  32934185 aaattttaaaatagtttttgattgtgcactttgctagtcaaaatagtttctaacattaaaataatttgttaatattgtcacattagtcttttaatatact 32934086  T
Q  275 t 275  Q
    |    
T  32934085 t 32934085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 21600463 - 21600575
Alignment:
Q  175 aaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatact 274  Q
    |||||| ||||||||| ||||||||||||||| ||| | ||||||||| || || ||||||| ||||||||| ||| |||||||||||||| ||||||||    
T  21600463 aaattttaaaatagtcattgattgtgcatttcgttaataaaattagtcactgatgttaaaatatttcattaatattgtcatatttgtccttcaatatact 21600562  T
Q  275 tgtttattgtcat 287  Q
    |  ||||||||||    
T  21600563 tacttattgtcat 21600575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 156 - 288
Target Start/End: Original strand, 7603934 - 7604067
Alignment:
Q  156 aatagtctttcaatg-atcgaaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatca 254  Q
    ||||||||||||||| ||| |||||| |||||| | |||||||||||| ||| || |||||| |||||||||||||| |||||| ||||||| ||| |||    
T  7603934 aatagtctttcaatgtatcaaaattttaaaataatttttgattgtgcacttcgttggtcaaaatagtctctaatattgaaatgtctcattaatattgtca 7604033  T
Q  255 tatttgtcctttaatatacttgtttattgtcata 288  Q
    ||||  || || |||||| ||  |||||||||||    
T  7604034 tattaatctttcaatatatttacttattgtcata 7604067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 171 - 300
Target Start/End: Complemental strand, 33508731 - 33508602
Alignment:
Q  171 atcgaaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaata 270  Q
    |||||||||| ||||||||  |||| |||||||||||||| ||||| || ||||| | ||||||||  |||||||| |||||| |||| |||||| ||||    
T  33508731 atcgaaatttcaaaatagttattgagtgtgcatttcattaatcaaaataatctctgacattaaaatacttcattaatattatcgtattagtccttcaata 33508632  T
Q  271 tacttgtttattgtcatatcagtttttata 300  Q
    |||||  ||||| | ||||||||| |||||    
T  33508631 tacttacttattattatatcagttattata 33508602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 307
Target Start/End: Original strand, 2986941 - 2987072
Alignment:
Q  175 aaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatact 274  Q
    |||||| |||||||| | |||| ||||||||  ||||||||| |||| | |||| ||||||||||||||||| | ||||||||| ||| || ||||||||    
T  2986941 aaattttaaaatagtttatgat-gtgcattttgttagtcaaaatagtatttaatgttaaaatgtttcattaatactatcatattagtctttcaatatact 2987039  T
Q  275 tgtttattgtcatatcagtttttataagtattt 307  Q
    |  |||||||||||  |||  ||||||||||||    
T  2987040 tacttattgtcatactagtccttataagtattt 2987072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 302
Target Start/End: Original strand, 42659871 - 42659991
Alignment:
Q  182 aaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatacttgtttat 281  Q
    |||||| | |||||||||||| | ||||||||||| | |||| | ||||||||||||||||| || ||| ||||||| ||| || |||||||||  ||||    
T  42659871 aaaataatttttgattgtgcaatccattagtcaaagttgtctttgatattaaaatgtttcatcaatattgtcatattagtcattcaatatacttacttat 42659970  T
Q  282 tgtcatatcagtttttataag 302  Q
    ||||| ||||||  |||||||    
T  42659971 tgtcacatcagtccttataag 42659991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 301
Target Start/End: Original strand, 41616701 - 41616828
Alignment:
Q  174 gaaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatac 273  Q
    ||||||| |||||| |||||  || |||| ||| ||||||||| ||||||   |||||||||||||| ||||| | |||||| |  ||||||| ||||||    
T  41616701 gaaattttaaaataatcttttgttatgcacttcgttagtcaaaatagtctacgatattaaaatgttttattaataatatcatttcagtccttttatatac 41616800  T
Q  274 ttgtttattgtcatatcagtttttataa 301  Q
    || ||||||||||||||| | |||||||    
T  41616801 ttatttattgtcatatcaatctttataa 41616828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 275
Target Start/End: Original strand, 21215939 - 21216055
Alignment:
Q  156 aatagtctttcaatg-atcgaaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatca 254  Q
    ||||||| ||||||| || ||||||| ||||||||| ||||||||||| ||| |||||||    ||||||| ||||||||||| || |||||  || |||    
T  21215939 aatagtccttcaatgtattgaaatttcaaaatagtcattgattgtgcacttcgttagtca----agtctctgatattaaaatgcttaattaatgttgtca 21216034  T
Q  255 tatttgtcctttaatatactt 275  Q
    |||  ||||||||||||||||    
T  21216035 tatcagtcctttaatatactt 21216055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 275
Target Start/End: Original strand, 6393839 - 6393943
Alignment:
Q  171 atcgaaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaata 270  Q
    |||||||||| ||||||||   |||||||||| || |||||||||| ||||  |||| ||||||||  ||| |||| ||||||||||| || ||| ||||    
T  6393839 atcgaaatttcaaaatagttcatgattgtgcactttattagtcaaaatagttcctaacattaaaatagttctttaatattatcatattagttcttcaata 6393938  T
Q  271 tactt 275  Q
    |||||    
T  6393939 tactt 6393943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 208 - 304
Target Start/End: Original strand, 21145463 - 21145559
Alignment:
Q  208 ttagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatacttgtttattgtcatatcagtttttataagta 304  Q
    ||||||||| |||||||| |  |||||||||||| |||| ||||||||||| |||  | |||||||||  ||| ||||||||||||  |||||||||    
T  21145463 ttagtcaaaatagtctcttacgttaaaatgtttcgttaatattatcatattagtctctcaatatacttacttactgtcatatcagtccttataagta 21145559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 257
Target Start/End: Original strand, 42844865 - 42844975
Alignment:
Q  148 ttggtcaaaatagtctttcaatg-atcgaaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaa 246  Q
    ||||||| ||| ||| ||||||| ||| ||||||   ||||| |||||||||| || || |||||||||| ||||  || ||||||||||||||||||||    
T  42844865 ttggtcacaattgtccttcaatgtatcaaaattttcgaataggctttgattgtacacttaattagtcaaaatagttcctgatattaaaatgtttcattaa 42844964  T
Q  247 cattatcatat 257  Q
     ||| ||||||    
T  42844965 tattgtcatat 42844975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 7681055 - 7680994
Alignment:
Q  175 aaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaat 236  Q
    |||||| |||||||| |||||||||||||||| ||||||||| | ||| |||| ||||||||    
T  7681055 aaattttaaaatagtatttgattgtgcatttcgttagtcaaaatcgtccctaacattaaaat 7680994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 286
Target Start/End: Original strand, 36754636 - 36754739
Alignment:
Q  183 aaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatacttgtttatt 282  Q
    |||| |||| |||||||  | ||||||||||||| | ||| |||| ||| ||||  |||||| | ||| ||||||| |||||| ||||||||| ||||||    
T  36754636 aaattgtctctgattgtatagttcattagtcaaaatggtccctaacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatt 36754735  T
Q  283 gtca 286  Q
    ||||    
T  36754736 gtca 36754739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 289
Target Start/End: Original strand, 13002958 - 13003072
Alignment:
Q  175 aaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatact 274  Q
    |||||| |||||||||||||||| |||| |   ||||||||| | || ||| | ||||||||||| |||||| ||| | |||||  ||| ||||| ||||    
T  13002958 aaattttaaaatagtctttgattatgcactatgttagtcaaaattgtttcttacattaaaatgttgcattaatattgttatattaatcccttaatgtact 13003057  T
Q  275 tgtttattgtcatat 289  Q
    |  ||||||||||||    
T  13003058 tacttattgtcatat 13003072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 289
Target Start/End: Complemental strand, 34949201 - 34949105
Alignment:
Q  193 tgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatacttgtttattgtcatat 289  Q
    ||||||||| |||  ||||||||| ||||   |||||||||||||||||  ||| ||| ||||||| |||||| |||||| ||  ||||| ||||||    
T  34949201 tgattgtgcgttttgttagtcaaaatagttcttaatattaaaatgtttcgataatattgtcatattagtccttaaatatagttacttattatcatat 34949105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 304
Target Start/End: Complemental strand, 44362571 - 44362539
Alignment:
Q  272 acttgtttattgtcatatcagtttttataagta 304  Q
    ||||| |||||||||||||||||||||||||||    
T  44362571 acttggttattgtcatatcagtttttataagta 44362539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 171 - 307
Target Start/End: Original strand, 10228757 - 10228893
Alignment:
Q  171 atcgaaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaata 270  Q
    |||||||||| ||||||||||||||||||||| ||| ||||||||| |||||| | |  |||||||||||  |||| |||  |||||| |||||| ||||    
T  10228757 atcgaaatttcaaaatagtctttgattgtgcaattcgttagtcaaaatagtctttgaccttaaaatgttttgttaaaatttacatattagtccttcaata 10228856  T
Q  271 tacttgtttattgtcatatcagtttttataagtattt 307  Q
    |||||  |||||||||||| |||| |||||| |||||    
T  10228857 tacttaattattgtcatataagttcttataaatattt 10228893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 171 - 304
Target Start/End: Original strand, 32996294 - 32996427
Alignment:
Q  171 atcgaaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaata 270  Q
    |||||||||| |||||||||| ||||||| || |||||| || ||| ||||||||||||||||| |  ||  |||| ||| ||||||| |||||| ||||    
T  32996294 atcgaaatttaaaaatagtctctgattgtacacttcatttgttaaaatagtctctaatattaaattaatttgttaatattgtcatattagtccttcaata 32996393  T
Q  271 tacttgtttattgtcatatcagtttttataagta 304  Q
    ||||| |||||| |||||| |||  |||||||||    
T  32996394 tacttatttattatcatattagtccttataagta 32996427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 275
Target Start/End: Original strand, 24325399 - 24325502
Alignment:
Q  175 aaatttgaaaatagtctttgattgtgcatttcattagtcaaat--tagtctctaatattaaaatgttt-cattaacattatcatatttgtcctttaatat 271  Q
    |||||| |||||||| |||||||||||| ||  ||||| |||   |||||||||||||| |||| ||| |||||| ||||||||||| |||||| |||||    
T  24325399 aaatttcaaaatagtttttgattgtgcaatttgttagtaaaaaaatagtctctaatattgaaattttttcattaatattatcatattggtccttcaatat 24325498  T
Q  272 actt 275  Q
    ||||    
T  24325499 actt 24325502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 275
Target Start/End: Original strand, 38838526 - 38838626
Alignment:
Q  175 aaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatact 274  Q
    |||||| ||||||||| ||||||||||| ||   |||||||| ||||| |||||||||||||  ||  |||| |||||||| || ||| |||||||||||    
T  38838526 aaattttaaaatagtccttgattgtgcacttttctagtcaaaatagtccctaatattaaaataatttgttaatattatcatgttagtcttttaatatact 38838625  T
Q  275 t 275  Q
    |    
T  38838626 t 38838626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 26910168 - 26910102
Alignment:
Q  182 aaaatagtctttgattgtgcatttcattagtcaaattagtc--tctaatattaaaatgtttcattaa 246  Q
    ||||||||| ||||||||||| ||||||||||||| || ||  | |||| |||||||||||||||||    
T  26910168 aaaatagtccttgattgtgcacttcattagtcaaaataatccatataatgttaaaatgtttcattaa 26910102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 304
Target Start/End: Original strand, 41870534 - 41870644
Alignment:
Q  195 attgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgt-cctttaatatacttgtttattgtcatatcagt 293  Q
    |||||| ||||  |||||||||  |||||| ||||||||||||||||| ||| ||| ||||||   | | ||||||||| ||  ||||||||||||||||    
T  41870534 attgtgtattttgttagtcaaaacagtctccaatattaaaatgtttcactaatattgtcatatcaatacttttaatatatttacttattgtcatatcagt 41870633  T
Q  294 ttttataagta 304  Q
      |||||||||    
T  41870634 ccttataagta 41870644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 291
Target Start/End: Complemental strand, 49078213 - 49078147
Alignment:
Q  225 taatattaaaatgtttcattaacattatcatatttgtcctttaatatacttgtttattgtcatatca 291  Q
    |||| ||||||||||||||||| ||| ||||||   ||||| |||||| ||||| ||||||||||||    
T  49078213 taatgttaaaatgtttcattaatattgtcatatcaatccttcaatatatttgttaattgtcatatca 49078147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 235
Target Start/End: Original strand, 23441494 - 23441574
Alignment:
Q  156 aatagtctttcaatg-atcgaaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaa 235  Q
    ||||||| ||||||| |||||||||| ||||||||  ||||||||||| ||| ||| ||||| |||| | |||| ||||||    
T  23441494 aatagtccttcaatgtatcgaaattttaaaatagttattgattgtgcacttcgttaatcaaaatagtttttaatgttaaaa 23441574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 307
Target Start/End: Original strand, 27376284 - 27376415
Alignment:
Q  175 aaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatact 274  Q
    |||||| |||||||||||  |||||||| ||| ||||||||| | ||| || || || |||| |||| |||| ||||||||||| ||  || ||||||||    
T  27376284 aaatttcaaaatagtctta-attgtgcacttctttagtcaaaatggtcactgatgttgaaatatttcgttaatattatcatattagtttttcaatatact 27376382  T
Q  275 tgtttattgtcatatcagtttttataagtattt 307  Q
    |  ||||||| ||| ||||  |||||| |||||    
T  27376383 tacttattgttatagcagtccttataaatattt 27376415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 293
Target Start/End: Complemental strand, 40355117 - 40354997
Alignment:
Q  173 cgaaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatata 272  Q
    ||||||||||||||||||| |||||||||| |   ||||||||| |||||  | | |||||||   |||||||| ||| ||||||| || |||  |||||    
T  40355117 cgaaatttgaaaatagtctctgattgtgcactatgttagtcaaaatagtcatttacattaaaacacttcattaatattgtcatattagttcttctatata 40355018  T
Q  273 cttgtttattgtcatatcagt 293  Q
    | |  |||||||||| |||||    
T  40355017 catacttattgtcatgtcagt 40354997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 171 - 291
Target Start/End: Complemental strand, 34979225 - 34979105
Alignment:
Q  171 atcgaaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaata 270  Q
    |||||||||| |||||||| ||| |||||||||||  ||||||||| |||||||| | |||||||| |||| |||| ||||||||||| ||| || ||||    
T  34979225 atcgaaattttaaaatagtttttaattgtgcattttgttagtcaaaatagtctctcacattaaaatatttcgttaatattatcatattagtcattcaata 34979126  T
Q  271 tacttgtttattgtcatatca 291  Q
    |||||  ||||||||||||||    
T  34979125 tacttacttattgtcatatca 34979105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 157 - 303
Target Start/End: Original strand, 46008567 - 46008714
Alignment:
Q  157 atagtctttcaatg-atcgaaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcat 255  Q
    ||||| |||||||| ||||| |||| |||||| ||||| ||| |||||||  ||||| ||| |||||| ||| ||||||||  ||| |||| ||| ||||    
T  46008567 atagtttttcaatgtatcgagatttcaaaataatctttaattatgcattttgttagttaaaatagtctttaacattaaaataattcgttaatattgtcat 46008666  T
Q  256 atttgtcctttaatatacttgtttattgtcatatcagtttttataagt 303  Q
    |||  || |||||||||||| |||||||||||||||||| ||||||||    
T  46008667 attaatcttttaatatacttatttattgtcatatcagttattataagt 46008714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 293
Target Start/End: Original strand, 45681162 - 45681301
Alignment:
Q  155 aaatagtctttcaatg-atcgaaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatc 253  Q
    ||||||||| |||||| ||| |||||| ||||||||| ||||||||||  |  |||| ||||| |||||||| || |||||||||||| |||| ||||||    
T  45681162 aaatagtctctcaatgtatcaaaatttcaaaatagtccttgattgtgcgctatattaatcaaaatagtctcttatgttaaaatgtttctttaatattatc 45681261  T
Q  254 atatttgtcctttaatatacttgtttattgtcatatcagt 293  Q
    ||||| ||||   ||| ||| | |||||||||||||||||    
T  45681262 atattagtcccccaatttacgtatttattgtcatatcagt 45681301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 175 - 304
Target Start/End: Original strand, 20948225 - 20948351
Alignment:
Q  175 aaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatact 274  Q
    |||||| |||||||| ||||||| |||||||  ||| |||||  | ||||| ||||||||||||| |||||| ||||||||||  || ||| ||||||||    
T  20948225 aaatttaaaaatagtatttgattatgcattt--ttattcaaaaaaatctctgatattaaaatgtt-cattaatattatcatatcagttcttcaatatact 20948321  T
Q  275 tgtttattgtcatatcagtttttataagta 304  Q
    | ||||||||||||||| |||||| |||||    
T  20948322 tatttattgtcatatcaatttttacaagta 20948351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 289
Target Start/End: Original strand, 14984463 - 14984581
Alignment:
Q  171 atcgaaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaata 270  Q
    |||||||||| |||||| ||  |||||||||| ||| ||||||||| ||||  || | |||||||| |||| |||| ||| |||||||  ||||| ||||    
T  14984463 atcgaaatttcaaaatactccctgattgtgcacttcgttagtcaaaatagttcctgacattaaaatatttcgttaatattgtcatattaatccttcaata 14984562  T
Q  271 tacttgtttattgtcatat 289  Q
    |||||| ||||||||||||    
T  14984563 tacttgcttattgtcatat 14984581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 293
Target Start/End: Complemental strand, 23195787 - 23195649
Alignment:
Q  156 aatagtctttcaatg-atcgaaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatca 254  Q
    ||||||||||||||| ||  |||||| |||||| | | ||||||||||||||||||||  || |||||| | | |||||| | |||| |||| ||| |||    
T  23195787 aatagtctttcaatgtattaaaattttaaaataatttctgattgtgcatttcattagttcaaatagtctatgacattaaagtatttcgttaatattgtca 23195688  T
Q  255 tatttgtcctttaatatacttgtttattgtcatatcagt 293  Q
    |||| ||| || |||||||||  ||||||||||||||||    
T  23195687 tattagtctttcaatatacttaattattgtcatatcagt 23195649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 275
Target Start/End: Original strand, 21568362 - 21568462
Alignment:
Q  175 aaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatact 274  Q
    |||||| |||||| ||  |||||||||| ||||||||||||| ||| |  | || |||||||| |||||||| ||| |||||||||||||| ||||||||    
T  21568362 aaatttcaaaataatcgctgattgtgcaattcattagtcaaaatagcccatgatgttaaaatgcttcattaatattctcatatttgtccttcaatatact 21568461  T
Q  275 t 275  Q
    |    
T  21568462 t 21568462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 230 - 304
Target Start/End: Original strand, 30843655 - 30843729
Alignment:
Q  230 ttaaaatgtttcattaacattatcatatttgtcctttaatatacttgtttattgtcatatcagtttttataagta 304  Q
    |||||||| |||||||| ||| ||||||| ||| || ||||||||| |||||||||||||||||  |||||||||    
T  30843655 ttaaaatgcttcattaatattgtcatattagtctttcaatatacttatttattgtcatatcagtccttataagta 30843729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 304
Target Start/End: Complemental strand, 1183282 - 1183133
Alignment:
Q  156 aatagtctttcaatg-atcgaaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatca 254  Q
    ||||||| ||||||| | |||||||| |||||| ||| |||||||||| |||   ||||||| |||||| | |||||||||| ||||| ||| ||| |||    
T  1183282 aatagtcattcaatgtaccgaaatttcaaaataatctatgattgtgcacttcgacagtcaaaatagtctttgatattaaaatatttcactaatattgtca 1183183  T
Q  255 tatttgtcctttaatatacttgtttattgtcatatcagtttttataagta 304  Q
    |||  ||| || ||||||  |  ||||||||||||||||  |||||||||    
T  1183182 tatcagtcattcaatatatgtacttattgtcatatcagtccttataagta 1183133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 293
Target Start/End: Complemental strand, 14194968 - 14194850
Alignment:
Q  175 aaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatact 274  Q
    |||||| |||||||||  | ||| |||| ||| | ||||||  |||||||| ||||||||||  |||||||| ||| ||||||  ||| |||||||||||    
T  14194968 aaatttcaaaatagtccattattatgcacttcttaagtcaatatagtctctgatattaaaatacttcattaatattgtcatatcagtcatttaatatact 14194869  T
Q  275 tgtttattgtcatatcagt 293  Q
    |  |||||||| |||||||    
T  14194868 tagttattgtcgtatcagt 14194850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 12832338 - 12832219
Alignment:
Q  156 aatagtctttcaatg-atcgaaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatca 254  Q
    ||||||||||||||| ||||||| ||   |||||||  | | |||||| ||| | | ||||| |||||||| ||||||||||| |||||||| ||| |||    
T  12832338 aatagtctttcaatgtatcgaaacttcgcaatagtccctaactgtgcacttcgtaaatcaaaatagtctcttatattaaaatgcttcattaatattgtca 12832239  T
Q  255 tatttgtcctttaatatact 274  Q
    |||  |||||| ||||||||    
T  12832238 tataagtccttcaatatact 12832219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 257
Target Start/End: Complemental strand, 47200007 - 47199924
Alignment:
Q  174 gaaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatat 257  Q
    ||||||| ||||||||| ||||| || || ||  ||||||||| |||| ||  ||||||||||| |||||||| ||||||||||    
T  47200007 gaaatttcaaaatagtcattgatcgtacactttgttagtcaaaatagtttccgatattaaaatgcttcattaatattatcatat 47199924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 304
Target Start/End: Original strand, 43908681 - 43908790
Alignment:
Q  195 attgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatacttgtttattgtcatatcagtt 294  Q
    ||||| |||||  |||||||||  | |||| ||| |||||| | |||||||| ||||||||||| |||  | |||||| || | |||| ||||||||||     
T  43908681 attgtacattttgttagtcaaaaaaatctcaaatgttaaaaagcttcattaatattatcatattagtcaatcaatatatttatatattatcatatcagtc 43908780  T
Q  295 tttataagta 304  Q
    ||||||||||    
T  43908781 tttataagta 43908790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 47944340 - 47944385
Alignment:
Q  171 atcgaaatttgaaaatagtctttgattgtgcatttcattagtcaaa 216  Q
    |||||||||| ||||||||||||||||||||| ||  |||||||||    
T  47944340 atcgaaattttaaaatagtctttgattgtgcactttgttagtcaaa 47944385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 246
Target Start/End: Original strand, 36080626 - 36080654
Alignment:
Q  218 tagtctctaatattaaaatgtttcattaa 246  Q
    |||||||||||||||||||||||||||||    
T  36080626 tagtctctaatattaaaatgtttcattaa 36080654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 307
Target Start/End: Complemental strand, 39336828 - 39336696
Alignment:
Q  175 aaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatact 274  Q
    |||||| |||||||| |||||||| | | ||| ||||||| | || |||||  | |||||||| |||||| | |||  ||||||  ||||| ||||||||    
T  39336828 aaattttaaaatagtttttgattgcggacttcgttagtcagaataatctctgctgttaaaatgcttcatttatattgacatattaatccttcaatatact 39336729  T
Q  275 tgtttattgtcatatcagtttttataagtattt 307  Q
    |  ||||| ||||||| ||  ||||||||||||    
T  39336728 tacttattatcatatccgtccttataagtattt 39336696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 43838868 - 43838820
Alignment:
Q  175 aaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtct 223  Q
    |||||| ||||||||| ||||||||||||||  ||||||||| ||||||    
T  43838868 aaattttaaaatagtcattgattgtgcattttgttagtcaaaatagtct 43838820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 47944595 - 47944547
Alignment:
Q  174 gaaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtc 222  Q
    ||||||| ||||||||||||||||||||| ||| ||| ||||| |||||    
T  47944595 gaaattttaaaatagtctttgattgtgcacttcgttaatcaaaatagtc 47944547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 156 - 288
Target Start/End: Original strand, 1618 - 1751
Alignment:
Q  156 aatagtctttcaatg-atcgaaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatca 254  Q
    ||||||||||||||| ||| |||||| |||||| | |||||||||||| ||| || |||||| |||||||||||||| |||||| ||||||| ||| |||    
T  1618 aatagtctttcaatgtatcaaaattttaaaataatttttgattgtgcacttcgttggtcaaaatagtctctaatattgaaatgtctcattaatattgtca 1717  T
Q  255 tatttgtcctttaatatacttgtttattgtcata 288  Q
    ||||  || || |||||| ||  |||||||||||    
T  1718 tattaatctttcaatatatttacttattgtcata 1751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 275
Target Start/End: Original strand, 23159090 - 23159190
Alignment:
Q  175 aaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatact 274  Q
    |||||| |||||||| |||||||||||||||| ||||| ||| ||||| || || || |||||||||||||| |||| ||||||||||||| ||| ||||    
T  23159090 aaattttaaaatagtatttgattgtgcatttcgttagtaaaaatagtccctgatgttgaaatgtttcattaatattaacatatttgtccttcaatttact 23159189  T
Q  275 t 275  Q
    |    
T  23159190 t 23159190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 252
Target Start/End: Complemental strand, 12403347 - 12403265
Alignment:
Q  170 gatcgaaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattat 252  Q
    ||||||||||| |||||||||||||||||| ||||| |||| ||||| ||||| || |||||| |||| |||||||| |||||    
T  12403347 gatcgaaattttaaaatagtctttgattgtccattttattactcaaaatagtccctgatattagaatgattcattaatattat 12403265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 307
Target Start/End: Original strand, 26675115 - 26675196
Alignment:
Q  225 taatattaaaatgtttcattaacattatcatatttgtcctttaatatacttgtttattgtcatatcagtttttataagtattt 307  Q
    |||| ||||||| ||||||||| ||| ||||||  |||||| ||||||||| |||||||||||||||||| ||||||||||||    
T  26675115 taatgttaaaatatttcattaatattgtcatata-gtccttcaatatacttatttattgtcatatcagttcttataagtattt 26675196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 307
Target Start/End: Original strand, 26946723 - 26946804
Alignment:
Q  225 taatattaaaatgtttcattaacattatcatatttgtcctttaatatacttgtttattgtcatatcagtttttataagtattt 307  Q
    |||| ||||||| ||||||||| ||| ||||||  |||||| ||||||||| |||||||||||||||||| ||||||||||||    
T  26946723 taatgttaaaatatttcattaatattgtcatata-gtccttcaatatacttatttattgtcatatcagttcttataagtattt 26946804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 301
Target Start/End: Original strand, 27001184 - 27001303
Alignment:
Q  182 aaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatacttgtttat 281  Q
    |||||||||| |||||||||| ||  ||||||||| |||||| | || |||||||  |||||||| ||| |||||||   || | |||||||||  ||||    
T  27001184 aaaatagtctatgattgtgcaatttgttagtcaaaatagtctttgatgttaaaatacttcattaatattgtcatattaccccgtcaatatacttacttat 27001283  T
Q  282 tgtcatatcagtttttataa 301  Q
    |||||||||||| |||||||    
T  27001284 tgtcatatcagtctttataa 27001303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 296
Target Start/End: Complemental strand, 917207 - 917082
Alignment:
Q  171 atcgaaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaata 270  Q
    |||||||||| |||||||||||||||||| || || |||  ||||| |||||||| | | |||||| |||  |||| ||| ||||||| ||| || ||||    
T  917207 atcgaaattttaaaatagtctttgattgtacactttatttatcaaaatagtctctcacaataaaatattttgttaatattgtcatattagtcattcaata 917108  T
Q  271 tacttgtttattgtcatatcagtttt 296  Q
    || || ||| ||||||||||| ||||    
T  917107 tatttattttttgtcatatcaatttt 917082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 289
Target Start/End: Original strand, 7313980 - 7314059
Alignment:
Q  210 agtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatacttgtttattgtcatat 289  Q
    ||||||| ||||| || ||||| |||| |||| |||| ||| ||||||| |||| ||||||||||| |||||||||||||    
T  7313980 agtcaaaatagtccctcatatttaaatatttcgttaatattgtcatattggtcccttaatatacttatttattgtcatat 7314059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 1041858 - 1041920
Alignment:
Q  211 gtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatac 273  Q
    |||||| ||||  ||||| ||||||||||||||||||||| ||||||| ||| ||||||||||    
T  1041858 gtcaaaatagttactaatgttaaaatgtttcattaacattgtcatattagtcttttaatatac 1041920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 275
Target Start/End: Original strand, 4658392 - 4658476
Alignment:
Q  191 tttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatactt 275  Q
    ||||||||| || ||| ||| ||||| |||||||| | ||||||||||| || ||| | ||||||||| ||| ||||||||||||    
T  4658392 tttgattgtacaattctttaatcaaaatagtctctcagattaaaatgttccactaataatatcatattagtcttttaatatactt 4658476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 296
Target Start/End: Complemental strand, 37181343 - 37181239
Alignment:
Q  192 ttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatacttgtttattgtcatatca 291  Q
    |||| |||||| ||| || |||||| || ||||||   |||||||||||| |||| ||| ||||||| || | |||||||||||  | ||||||||||||    
T  37181343 ttgactgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcattaatatacttactaattgtcatatca 37181244  T
Q  292 gtttt 296  Q
    |||||    
T  37181243 gtttt 37181239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 22579319 - 22579392
Alignment:
Q  182 aaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcat 255  Q
    |||||||||||| |||||||| ||| |||||| || ||||||||||| ||| ||| |||| |||| ||| ||||    
T  22579319 aaaatagtctttaattgtgcacttcgttagtcgaaatagtctctaatgttagaatatttcgttaatattgtcat 22579392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 39194868 - 39194944
Alignment:
Q  182 aaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatt 258  Q
    ||||||||| ||||||||||| ||  ||||||||| ||||| ||   ||||||||||||| |||| ||| |||||||    
T  39194868 aaaatagtcattgattgtgcactttgttagtcaaaatagtcactgccattaaaatgtttcgttaatattgtcatatt 39194944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 286
Target Start/End: Original strand, 20053 - 20156
Alignment:
Q  183 aaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatacttgtttatt 282  Q
    |||| |||| ||||||| || ||||||||||||| |||||||||| ||| ||||  |||||| | ||| ||||||| |||||| ||||||||| ||||||    
T  20053 aaattgtctctgattgtacacttcattagtcaaaatagtctctaacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatt 20152  T
Q  283 gtca 286  Q
    ||||    
T  20153 gtca 20156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 293
Target Start/End: Complemental strand, 9307509 - 9307391
Alignment:
Q  174 gaaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatac 273  Q
    ||||||| |||||||||  ||| ||||||||||||| ||||||| |||| || | ||||||||  |||||||||||| ||||||| |||||| |||||||    
T  9307509 gaaattttaaaatagtccctgaatgtgcatttcatttgtcaaat-agtccctgacattaaaataattcattaacattgtcatattagtccttcaatatac 9307411  T
Q  274 ttgtttattgtcatatcagt 293  Q
    ||  ||||| |||| |||||    
T  9307410 ttacttattttcatttcagt 9307391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 175 - 307
Target Start/End: Complemental strand, 33551130 - 33550997
Alignment:
Q  175 aaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgt-cctttaatatac 273  Q
    |||||| |||||| | | |||||||||||||| ||||||||| || | ||| || || ||||||||| |||| ||||||||||| || |||| | |||||    
T  33551130 aaattttaaaatattatctgattgtgcatttcgttagtcaaaataatttctgatgttgaaatgtttctttaatattatcatattagtcccttcagtatac 33551031  T
Q  274 ttgtttattgtcatatcagtttttataagtattt 307  Q
    || |||||||| |||| |||  ||||||||||||    
T  33551030 ttatttattgttatattagtccttataagtattt 33550997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 275
Target Start/End: Complemental strand, 21021138 - 21021038
Alignment:
Q  175 aaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatact 274  Q
    |||||| ||||||||  |||||| ||||||| |||||||||| |||||  ||| |||||||| |||| |||  ||||||||||| |||||| ||||||||    
T  21021138 aaattttaaaatagttattgattatgcattttattagtcaaaatagtcattaacattaaaatatttcgttattattatcatattagtccttcaatatact 21021039  T
Q  275 t 275  Q
    |    
T  21021038 t 21021038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 307
Target Start/End: Original strand, 10219595 - 10219725
Alignment:
Q  172 tcgaaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatat 271  Q
    ||||||||| ||||||||   |||||||||| ||  ||||||||| |||||||| |  |||||||  ||| |||| ||| ||||||  |||||||| |||    
T  10219595 tcgaaatttcaaaatagttcctgattgtgcactttgttagtcaaaatagtctctgacgttaaaataattcgttaatattgtcatata-gtcctttagtat 10219693  T
Q  272 acttgtttattgtcatatcagtttttataagtattt 307  Q
    ||||    |||||||||||||| |||||||||||||    
T  10219694 actt----attgtcatatcagtctttataagtattt 10219725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 293
Target Start/End: Complemental strand, 16431665 - 16431584
Alignment:
Q  212 tcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatacttgtttattgtcatatcagt 293  Q
    ||||| |||||||||| ||||||||  |||| ||| ||| ||||||| ||| || |||||||||  ||||||||||||||||    
T  16431665 tcaaaatagtctctaacattaaaataattcactaatattgtcatattagtcattcaatatacttacttattgtcatatcagt 16431584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 286
Target Start/End: Complemental strand, 17848854 - 17848762
Alignment:
Q  194 gattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatacttgtttattgtca 286  Q
    ||||||||||||| ||||||||| |||||| ||| ||||||||  ||| |||| |||  |||||| ||| ||| ||||||||  |||||||||    
T  17848854 gattgtgcatttcgttagtcaaaatagtctttaacattaaaatacttcgttaatattgacatattagtcatttgatatacttacttattgtca 17848762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 7515671 - 7515596
Alignment:
Q  182 aaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatat 257  Q
    ||||||||| |||||| ||||||   ||||||||| || |||||   |||||||||||||||||| ||||||||||    
T  7515671 aaaatagtcattgattatgcattatcttagtcaaaatactctcttgcattaaaatgtttcattaatattatcatat 7515596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 286
Target Start/End: Complemental strand, 21237376 - 21237273
Alignment:
Q  183 aaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatacttgtttatt 282  Q
    |||| |||| |||||||  ||||| |||||||||||| |  |||| ||||||||  |||||||||||| ||||||| | | || |||||||||  |||||    
T  21237376 aaattgtctctgattgtatatttcgttagtcaaattaattcctaacattaaaatacttcattaacattgtcatattagccgttcaatatacttagttatt 21237277  T
Q  283 gtca 286  Q
    ||||    
T  21237276 gtca 21237273  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 257
Target Start/End: Original strand, 7954811 - 7954873
Alignment:
Q  195 attgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatat 257  Q
    |||||| ||||| ||||||| | |||| | | |||||||||||||||||| ||||||||||||    
T  7954811 attgtgtatttcgttagtcataatagttttttatattaaaatgtttcattgacattatcatat 7954873  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 256
Target Start/End: Complemental strand, 4964333 - 4964252
Alignment:
Q  175 aaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcata 256  Q
    |||||| |||||||||  | ||| |||| || |||||||||| |||| | | ||||||||||| |||||||| |||||||||    
T  4964333 aaattttaaaatagtcaataattatgcactttattagtcaaaatagtttttgatattaaaatgcttcattaatattatcata 4964252  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 23887629 - 23887681
Alignment:
Q  252 tcatatttgtcctttaatatacttgtttattgtcatatcagtttttataagta 304  Q
    ||||||| |||||| |||||| ||| ||||| ||||||||||| |||||||||    
T  23887629 tcatattagtccttcaatataattgcttattttcatatcagttcttataagta 23887681  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 304
Target Start/End: Original strand, 33747305 - 33747459
Alignment:
Q  151 gtcaaaatagtctttcaatg-atcgaaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacat 249  Q
    |||| ||||||  ||||||| |||||||||| |||| ||| ||||||| |||| ||| ||||||||| |||||||| ||||||||||| | |||||| ||    
T  33747305 gtcacaatagttcttcaatgtatcgaaatttcaaaacagtatttgattctgcacttcgttagtcaaaatagtctctgatattaaaatgctccattaatat 33747404  T
Q  250 tatcatatttgtcctttaatatacttgtttattgtcatatcagtttttataagta 304  Q
    | ||||||| ||| || ||| ||  |  ||||||| | ||||||| |||||||||    
T  33747405 tgtcatattagtcgttcaatttatatacttattgtaacatcagttcttataagta 33747459  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 34827052 - 34826978
Alignment:
Q  230 ttaaaatgtttcattaacattatcatatttgtcctttaatatacttgtttattgtcatatcagtttttataagta 304  Q
    |||||||||||| |||| ||| ||||||| ||| || ||||||||| |||||||||||||||||  |||||||||    
T  34827052 ttaaaatgtttcgttaatattgtcatattagtcattcaatatacttatttattgtcatatcagtacttataagta 34826978  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 229 - 301
Target Start/End: Original strand, 6541119 - 6541191
Alignment:
Q  229 attaaaatgtttcattaacattatcatatttgtcctttaatatacttgtttattgtcatatcagtttttataa 301  Q
    |||||||| |||| |||| ||| ||||||| |||||| |||||||||  |||||||||||||||| |||||||    
T  6541119 attaaaatatttcgttaatattgtcatattagtccttcaatatacttacttattgtcatatcagtctttataa 6541191  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 286
Target Start/End: Complemental strand, 49880266 - 49880163
Alignment:
Q  183 aaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatacttgtttatt 282  Q
    |||| |||| ||||||| || ||||||||||||| ||||| |||| ||||||||  |||||| | ||| ||||||| ||| || |||||||||  |||||    
T  49880266 aaattgtctctgattgtacacttcattagtcaaaatagtccctaacattaaaatacttcattgatattgtcatattagtctttcaatatacttacttatt 49880167  T
Q  283 gtca 286  Q
    ||||    
T  49880166 gtca 49880163  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 304
Target Start/End: Original strand, 26515139 - 26515260
Alignment:
Q  182 aaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatacttgtttat 281  Q
    |||||||||  | |||||| ||||||||||||||| |||||||| ||  | |||||||| ||| | ||| ||||||| ||||||  ||||||||  ||||    
T  26515139 aaaatagtccctaattgtgtatttcattagtcaaaatagtctctgatgatgaaatgtttaatt-atattgtcatattagtccttcgatatacttaattat 26515237  T
Q  282 tgtcatatcagtttttataagta 304  Q
    ||| |||||| | ||||||||||    
T  26515238 tgttatatcaatctttataagta 26515260  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 293
Target Start/End: Complemental strand, 32743375 - 32743257
Alignment:
Q  175 aaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatact 274  Q
    |||||| |||||| ||||||||||| |||||| ||||||||| || ||||| | |||||||| ||||  ||| ||| | |||||  || || ||||||||    
T  32743375 aaattttaaaataatctttgattgtacatttcgttagtcaaaataatctctgacattaaaatatttcgctaatattcttatattaatcattcaatatact 32743276  T
Q  275 tgtttattgtcatatcagt 293  Q
    |  ||| ||||||||||||    
T  32743275 tacttactgtcatatcagt 32743257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 245
Target Start/End: Complemental strand, 35684954 - 35684864
Alignment:
Q  156 aatagtctttcaatg-atcgaaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcatta 245  Q
    ||||||| ||||||| ||| |||| | |||||||||  |||||||||| ||| ||||||||| |||||  |||| ||||||||||||||||    
T  35684954 aatagtccttcaatgtatcaaaatctcaaaatagtccatgattgtgcagttcgttagtcaaaatagtcattaatgttaaaatgtttcatta 35684864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 240
Target Start/End: Complemental strand, 34177550 - 34177465
Alignment:
Q  156 aatagtctttcaatgatc-gaaatttgaaaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgttt 240  Q
    ||||||| |||||||||  ||||||| |||||||||  ||||||||||||   ||||||||| |||||||| | ||||||||||||    
T  34177550 aatagtccttcaatgatttgaaatttcaaaatagtccatgattgtgcattatgttagtcaaaatagtctcttacattaaaatgttt 34177465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 50155802 - 50155749
Alignment:
Q  193 tgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaa 246  Q
    ||||||| || ||||||||||||| ||||| || ||||||||||||||||||||    
T  50155802 tgattgtacaattcattagtcaaaatagtcactgatattaaaatgtttcattaa 50155749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 301
Target Start/End: Complemental strand, 5043486 - 5043414
Alignment:
Q  229 attaaaatgtttcattaacattatcatatttgtcctttaatatacttgtttattgtcatatcagtttttataa 301  Q
    |||||||| |||  |||| ||| | ||||| ||| || ||||||||| |||||||||||||||||||||||||    
T  5043486 attaaaatattttgttaatattgttatattggtcattcaatatacttatttattgtcatatcagtttttataa 5043414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 307
Target Start/End: Original strand, 8984017 - 8984116
Alignment:
Q  208 ttagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatacttgtttattgtcatatcagtttttataagtattt 307  Q
    ||||||||| |||||||| | ||||||||||||  |||| ||| ||| ||| |||  ||||||||||| |||||||||| ||  ||| ||| ||||||||    
T  8984017 ttagtcaaaatagtctcttacattaaaatgttttgttaatattctcacattagtctcttaatatacttatttattgtcacatttgttcttaaaagtattt 8984116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 298
Target Start/End: Complemental strand, 33747904 - 33747839
Alignment:
Q  233 aaatgtttcattaacattatcatatttgtcctttaatatacttgtttattgtcatatcagttttta 298  Q
    |||||||||||||| ||| |||||||  ||||| ||||||||| ||| || |||||||||| ||||    
T  33747904 aaatgtttcattaatattgtcatattaatccttcaatatacttatttcttatcatatcagtattta 33747839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 275
Target Start/End: Original strand, 9890589 - 9890681
Alignment:
Q  183 aaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatactt 275  Q
    |||| |||||||||||| |||||| ||||||||| || ||  ||| |||| |||  ||| |||| ||| ||||||| |||||| |||||||||    
T  9890589 aaattgtctttgattgtacatttcgttagtcaaaataatccttaacattagaatacttcgttaatattgtcatattagtccttcaatatactt 9890681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 35621524 - 35621472
Alignment:
Q  252 tcatatttgtcctttaatatacttgtttattgtcatatcagtttttataagta 304  Q
    ||||||| ||||||||||||||||  ||||| |||||||||| || |||||||    
T  35621524 tcatattagtcctttaatatacttacttattttcatatcagtcttcataagta 35621472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 304
Target Start/End: Complemental strand, 36145062 - 36144966
Alignment:
Q  208 ttagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatacttgtttattgtcatatcagtttttataagta 304  Q
    ||||||||| |||||  | || ||||||| ||| ||||| ||| ||||||| ||  || |||||||||  ||||||||||||||||  |||||||||    
T  36145062 ttagtcaaaatagtccatgatgttaaaatcttttattaatattgtcatattagtttttcaatatacttagttattgtcatatcagtccttataagta 36144966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 194 - 286
Target Start/End: Original strand, 2447 - 2539
Alignment:
Q  194 gattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatacttgtttattgtca 286  Q
    |||||| || ||||||||||||| ||||| |||| ||| ||||  |||||| | ||| ||||||| |||||| ||||||||| ||||||||||    
T  2447 gattgtacacttcattagtcaaaatagtccctaacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttattgtca 2539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 282
Target Start/End: Complemental strand, 35128 - 35029
Alignment:
Q  183 aaatagtctttgattgtgcatttcattagtcaaattagtctctaatattaaaatgtttcattaacattatcatatttgtcctttaatatacttgtttatt 282  Q
    |||| |||| || |||| || ||||||||||||| ||||| |||| ||| ||||  |||||| | ||| ||||||| |||||| ||||||||| ||||||    
T  35128 aaattgtctctggttgtacacttcattagtcaaaatagtccctaacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatt 35029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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