View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20313_low_16 (Length: 270)
Name: NF20313_low_16
Description: NF20313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20313_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 75 - 155
Target Start/End: Complemental strand, 8839232 - 8839152
Alignment:
| Q |
75 |
gcattgtgtgacgagaaggaagcaaaagtaaacgatccaactacgtagcaaatttggaaaatataaatcgttatctatata |
155 |
Q |
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| T |
8839232 |
gcattgtgtgacgagaaggaagcaaaagtaaacgatccaactacgtaccaaatttggaaaatataaatcgttatctatata |
8839152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 8839355 - 8839292
Alignment:
| Q |
81 |
tgtgacgagaaggaagcaaaagtaaacgatccaactacgtagcaaatttggaaaatataaatcg |
144 |
Q |
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| T |
8839355 |
tgtgacgagaaggaagcaaaagtaaacgatccaagtaggtaccaaatttggaaaatataaatcg |
8839292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 8839343 - 8839282
Alignment:
| Q |
13 |
gaagcaaaggtaaacgatccaagtaggtaccaaatttggaaaatataaataaagttttctat |
74 |
Q |
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| T |
8839343 |
gaagcaaaagtaaacgatccaagtaggtaccaaatttggaaaatataaatcgagttttctat |
8839282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 8839214 - 8839165
Alignment:
| Q |
13 |
gaagcaaaggtaaacgatccaagtaggtaccaaatttggaaaatataaat |
62 |
Q |
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| T |
8839214 |
gaagcaaaagtaaacgatccaactacgtaccaaatttggaaaatataaat |
8839165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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