View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20313_low_17 (Length: 266)
Name: NF20313_low_17
Description: NF20313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20313_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 8018538 - 8018775
Alignment:
| Q |
18 |
acagtaaccagttggcagaggctgatgagtttgaagataagatgaaggaacttgagagcctttgcaacccaatcattgccaagatgtatcaaggtggagg |
117 |
Q |
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| T |
8018538 |
acagtaaccagttggcagaggctgatgagtttgaagataagatgaaggaacttgagagcctttgcaacccaatcattgccaagatgtatcaaggtggagg |
8018637 |
T |
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| Q |
118 |
tgctcctgatatgggtggtggtatggatgatgaagttcctccagcagcaggtggtgctggtcctaagattgaagaagtcgattaagtttaatgtttgatt |
217 |
Q |
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| T |
8018638 |
tgctcctgatatgggtggtggtatggatgatgaagttcctccagcagcaggtggtgctggtcctaagattgaagaagtcgattaaatttaatgtttgatt |
8018737 |
T |
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| Q |
218 |
agttagatgggggtcatatattgcggtcaaggtccttt |
255 |
Q |
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| T |
8018738 |
agttagacgggggtcatatattgcggtcaaggtccttt |
8018775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 39984684 - 39984593
Alignment:
| Q |
23 |
aaccagttggcagaggctgatgagtttgaagataagatgaaggaacttgagagcctttgcaacccaatcattgccaagatgtatcaaggtgg |
114 |
Q |
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| T |
39984684 |
aaccagcttgcagaggctgatgagtttgaggacaagatgaaggaacttgaaggtgtctgcaaccctatcattgccaagatgtaccaaggtgg |
39984593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 8101687 - 8101612
Alignment:
| Q |
41 |
gatgagtttgaagataagatgaaggaacttgagagcctttgcaacccaatcattgccaagatgtatcaaggtggag |
116 |
Q |
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| T |
8101687 |
gatgagtttgaagacaagatgaaggagcttgagacaatctgtaacccaatcattgcaaagatgtaccaaggtggag |
8101612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 113
Target Start/End: Original strand, 23588874 - 23588953
Alignment:
| Q |
34 |
agaggctgatgagtttgaagataagatgaaggaacttgagagcctttgcaacccaatcattgccaagatgtatcaaggtg |
113 |
Q |
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| T |
23588874 |
agaggctgatgaatttgaggacaagatgaaggagctggagggcatttgcaaccctatcattgcaaggatgtatcaaggtg |
23588953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 113
Target Start/End: Original strand, 23597726 - 23597805
Alignment:
| Q |
34 |
agaggctgatgagtttgaagataagatgaaggaacttgagagcctttgcaacccaatcattgccaagatgtatcaaggtg |
113 |
Q |
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| T |
23597726 |
agaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtg |
23597805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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