View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20313_low_18 (Length: 256)
Name: NF20313_low_18
Description: NF20313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20313_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 22802876 - 22802636
Alignment:
| Q |
1 |
cactataagatcatcaactcatattctatttgtaacatgtaaagatataaaaatatgtctaatactctcatgtttgttattacttttattgtattggtta |
100 |
Q |
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| T |
22802876 |
cactataagatcatcaactcatattctatttgtaacatgtaaagatataaaaatatgtctaatactctcatgtttgttattacttttattgtattggtta |
22802777 |
T |
|
| Q |
101 |
ccctatttcttggtccaaagaatgtttatggtgagctacttcttcaagcttttcaaatttccttattttgtttgtagttactgaatannnnnnnnnnnnn |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22802776 |
ccctatttcttggtccaaagaatgtttatggtgagctacttcttcaagcttttcaaatttccttattttgtttgtagttactgaatattttttatttttt |
22802677 |
T |
|
| Q |
201 |
nnagtaacattattttactcaattttacattacagcatttc |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
22802676 |
ttagtaacattattttactcaattttacattacagcatttc |
22802636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 23212570 - 23212391
Alignment:
| Q |
1 |
cactataagatcatcaactcatattctatttgtaacatgtaaagatataaaaatatgtctaatactctcatgtttgttattacttttattgtattggtta |
100 |
Q |
| |
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|||||||| ||||| || |||||||||| || | || || ||||| |||||||||||| ||||||||||| ||||| | || | ||||| ||||||||| |
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| T |
23212570 |
cactataaaatcattaaatcatattctactttttacttgaaaagagataaaaatatgtttaatactctcacgtttgcttttgttattattttattggtta |
23212471 |
T |
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| Q |
101 |
ccctatttcttggtccaaagaatgtttatggtgagctacttcttcaagcttttcaaatttccttattttgtttgtagtta |
180 |
Q |
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| |||||||||| ||||||||||||| |||||||| || ||||| | |||||||| ||||||| ||||||||||||||| |
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| T |
23212470 |
ctctatttcttgttccaaagaatgttgatggtgagttatctcttctaccttttcaattttccttcttttgtttgtagtta |
23212391 |
T |
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