View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20313_low_19 (Length: 249)
Name: NF20313_low_19
Description: NF20313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20313_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 40134549 - 40134772
Alignment:
| Q |
18 |
attttggtccctacaacactcaaagtcactccctccattctctcttagattatttgcactaaatgtaggagcatgcagtcatatgcgactgtaaaggatc |
117 |
Q |
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| T |
40134549 |
attttggtccctagaacactcaaagtcactccctccattctctcttagattatttgcactaaatgtaggagcatgcagtcatatgcgactctaaaggatc |
40134648 |
T |
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| Q |
118 |
atggtcccaaagtgcaaagtcattaaattaagataaaacaacaaacgaaatcaaatcaagaggttgnnnnnnnatcaggtaacttgaccattaacaggat |
217 |
Q |
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| T |
40134649 |
atggtcccaaagtgcaaagtcattaaattaagataaaacaacaaacgaaatcaaatcaagaggttgtttttttatcaggtaacttgaccattaacaggat |
40134748 |
T |
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| Q |
218 |
tagaattactgttttcagtataat |
241 |
Q |
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| T |
40134749 |
tagaattaccgttttcaatataat |
40134772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 40136005 - 40135964
Alignment:
| Q |
197 |
taacttgaccattaacaggattagaattactgttttcagtat |
238 |
Q |
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| T |
40136005 |
taacttgaccattaacatgattagaattaccgctttcagtat |
40135964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 2127776 - 2127862
Alignment:
| Q |
38 |
caaagtcactccctccattctctctt--agattatttgcactaaatgtaggagcatgcagtcatatgcgactgtaaaggatcatggt |
122 |
Q |
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|||||||| |||||| |||||||||| ||||||||| ||||||||||| | ||||||||||||||||||||||| ||||||||||| |
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| T |
2127776 |
caaagtcattccctctattctctcttttagattattttcactaaatgtatgcgcatgcagtcatatgcgactgtagaggatcatggt |
2127862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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