View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20313_low_2 (Length: 591)
Name: NF20313_low_2
Description: NF20313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20313_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 69 - 378
Target Start/End: Complemental strand, 24819570 - 24819242
Alignment:
| Q |
69 |
ttgatcaaaactcagcgaaagggtcaaggagaaaccttagaaaaatagggtggaaggatgagggaagatgcgatagagtgagaggaaaaagcattcaata |
168 |
Q |
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| T |
24819570 |
ttgatcaaaactcagcgaaagggtcaaggagaaaccttagaaaaatagggtggaaggatgagggaagatgcgatagagtgagaggaaaaag-agaaaata |
24819472 |
T |
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| Q |
169 |
atgtggagactgaacatattactatggagcgttgaattaaaattgaatagagaggaaaagaatagcattagcaagctctataaattctt----------g |
258 |
Q |
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| T |
24819471 |
atgtggagactgaacatattacgatggagcgttgaattaaaattgaatagagaggaaaagaa------tagcaagctctataaattcttggtaacatgag |
24819378 |
T |
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| Q |
259 |
ttaacattggaaa---------------ctgacagtcaaaatacacgttggtatcagcacataggaaattggaattacaaagtggaatg-ttggtggatt |
342 |
Q |
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| T |
24819377 |
ttaacattggaaactgataaaattaagcctgacagtcaaaatacacgttggtatcagcacataggaaattggaattacaaagtggaatgtttggtggatt |
24819278 |
T |
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| Q |
343 |
accagttaccacttagaagaattgaatgctttcaaa |
378 |
Q |
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| T |
24819277 |
accagttaccacttagaagaattgaatgctttcaaa |
24819242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 379 - 574
Target Start/End: Complemental strand, 24819182 - 24818986
Alignment:
| Q |
379 |
tagataagttatgatatatgaatgcaaggattgaccgatgatcatcttttaatggtaaattaaatgggggcactgatgagtggttctattttccctatat |
478 |
Q |
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| T |
24819182 |
tagataagt-atgatatatgaatgcaaggattgaccgatgatcatcttttaatggtaaattaaatgggggcactgatgagtggttctattttccctatat |
24819084 |
T |
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| Q |
479 |
atat--gtaacactctaaagtgaaaaggcacacatttttgcctatttcttcatcctttgtttgctatcaaggtgtgtgtttagcttctgtcgactcct |
574 |
Q |
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| T |
24819083 |
atatatgtaacactctaaagtgaaaaggcacacatttttgcctatttcttcatccgttgtttgctatcaaggtgtgtgtttagcttctgtcgactcct |
24818986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 77
Target Start/End: Complemental strand, 24819761 - 24819727
Alignment:
| Q |
43 |
caattgatgaacaatttaatactaatttgatcaaa |
77 |
Q |
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| T |
24819761 |
caattgatgaacaatttaatactaatttgatcaaa |
24819727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 71 - 208
Target Start/End: Original strand, 10426201 - 10426336
Alignment:
| Q |
71 |
gatcaaaactcagcgaaagggtcaaggagaaaccttagaaaaatagggtggaaggatgagggaagatgcgatagagtgagaggaaaaagcattcaataat |
170 |
Q |
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|||||||||||| || |||||| ||| |||||| |||||||||||||||||||||| |||||| ||| ||||| |||||| | ||||| | |||||| |
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| T |
10426201 |
gatcaaaactcaacgcaagggtaaagaagaaacagtagaaaaatagggtggaaggataagggaaaatgggatag-gtgagaag-aaaaggagagaataat |
10426298 |
T |
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| Q |
171 |
gtggagactgaacatattactatggagcgttgaattaa |
208 |
Q |
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| T |
10426299 |
gtggagaacggagatattacgatgaagcgttgaattaa |
10426336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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