View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20313_low_4 (Length: 448)

Name: NF20313_low_4
Description: NF20313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20313_low_4
NF20313_low_4
[»] chr7 (1 HSPs)
chr7 (1-429)||(33109737-33110172)
[»] chr5 (6 HSPs)
chr5 (374-426)||(31206383-31206435)
chr5 (374-426)||(4603917-4603969)
chr5 (374-426)||(11064661-11064713)
chr5 (378-426)||(23016712-23016760)
chr5 (374-426)||(24286209-24286261)
chr5 (374-426)||(24375961-24376013)
[»] chr2 (4 HSPs)
chr2 (374-426)||(7250363-7250415)
chr2 (374-426)||(43963869-43963921)
chr2 (371-429)||(19174899-19174957)
chr2 (374-426)||(35943824-35943876)
[»] chr1 (2 HSPs)
chr1 (374-422)||(26986090-26986138)
chr1 (374-426)||(39714655-39714707)
[»] chr4 (2 HSPs)
chr4 (374-423)||(42281102-42281151)
chr4 (374-426)||(6427128-6427179)
[»] chr3 (2 HSPs)
chr3 (373-422)||(26158955-26159004)
chr3 (374-426)||(40302651-40302703)


Alignment Details
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Complemental strand, 33110172 - 33109737
Alignment:
Q  1 tttgtgagaagaagacaaaaagtgataggacataaaagaagataagggatataaaatggacttacctgattgaaaatttggtttaggcaatgacttgcca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33110172 tttgtgagaagaagacaaaaagtgataggacataaaagaagataagggatataaaatggacttacctgattgaaaatttggtttaggcaatgacttgcca 33110073  T
Q  101 atgttgctattaatttatactttgatatcagacttctctgacatttgtaaatgttatcatgattcgtgacttgcgaaatcaaattattattattatcaga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33110072 atgttgctattaatttatactttgatatcagacttctctgacatttgtaaatgttatcatgatttgtgacttgcgaaatcaaattattattattatcaga 33109973  T
Q  201 aagatcacttcgagtttgagaagacacgggagaagatatattgttttcagaaagcatggtatgagaaaaatcatgatcaaatgacaggtacactagctgg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33109972 aagatcacttcgagtttgagaagacacgggagaagatatattgttttcagaaagcatggtatgagaaaaatcatgatcaaatgacaggtacactagctgg 33109873  T
Q  301 attttgctgaggggtagcaatgcatgatgtat-------gatgcctaagctttcataaaaggaaggataacactctgaattcggtatccggcccaaggac 393  Q
    ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33109872 attttgctgaggggtagcaatgcatgatgtatgatgaatgatgcctaagctttcataaaaggaaggataacactctgaattcggtatccggcccaaggac 33109773  T
Q  394 atactaatccgaggggttcaatcccaccgtccattt 429  Q
    ||||||||||||||||||||||||||||||||||||    
T  33109772 atactaatccgaggggttcaatcccaccgtccattt 33109737  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 426
Target Start/End: Complemental strand, 31206435 - 31206383
Alignment:
Q  374 tcggtatccggcccaaggacatactaatccgaggggttcaatcccaccgtcca 426  Q
    ||||||||||||||||||||  |||||||||||| || |||||||||||||||    
T  31206435 tcggtatccggcccaaggaccgactaatccgaggagtccaatcccaccgtcca 31206383  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 426
Target Start/End: Complemental strand, 4603969 - 4603917
Alignment:
Q  374 tcggtatccggcccaaggacatactaatccgaggggttcaatcccaccgtcca 426  Q
    ||||||||||  ||||||||  ||||||||||||||  |||||||||||||||    
T  4603969 tcggtatccgatccaaggaccgactaatccgaggggaccaatcccaccgtcca 4603917  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 426
Target Start/End: Complemental strand, 11064713 - 11064661
Alignment:
Q  374 tcggtatccggcccaaggacatactaatccgaggggttcaatcccaccgtcca 426  Q
    ||||||||| ||| ||||||| |||||| |||||| ||||||||||| |||||    
T  11064713 tcggtatccagcctaaggacagactaattcgagggtttcaatcccactgtcca 11064661  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 426
Target Start/End: Original strand, 23016712 - 23016760
Alignment:
Q  378 tatccggcccaaggacatactaatccgaggggttcaatcccaccgtcca 426  Q
    ||||||| | |||||| |||||||||||||||| ||||| |||||||||    
T  23016712 tatccggtctaaggacctactaatccgaggggtccaatctcaccgtcca 23016760  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 426
Target Start/End: Original strand, 24286209 - 24286261
Alignment:
Q  374 tcggtatccggcccaaggacatactaatccgaggggttcaatcccaccgtcca 426  Q
    ||||||||||||| ||||||  |||||||||| |||| ||||||||| |||||    
T  24286209 tcggtatccggcctaaggactgactaatccgatgggtccaatcccactgtcca 24286261  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 426
Target Start/End: Complemental strand, 24376013 - 24375961
Alignment:
Q  374 tcggtatccggcccaaggacatactaatccgaggggttcaatcccaccgtcca 426  Q
    ||||||||||||| ||||||  |||||||||| |||| ||||||||| |||||    
T  24376013 tcggtatccggcctaaggactgactaatccgatgggtccaatcccactgtcca 24375961  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 426
Target Start/End: Complemental strand, 7250415 - 7250363
Alignment:
Q  374 tcggtatccggcccaaggacatactaatccgaggggttcaatcccaccgtcca 426  Q
    |||||||| |||||||||||  ||||||||||||||| ||||||||| |||||    
T  7250415 tcggtatctggcccaaggacggactaatccgaggggtccaatcccactgtcca 7250363  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 426
Target Start/End: Original strand, 43963869 - 43963921
Alignment:
Q  374 tcggtatccggcccaaggacatactaatccgaggggttcaatcccaccgtcca 426  Q
    ||||||||| ||||||||||  ||||||| ||||||| |||||||||||||||    
T  43963869 tcggtatccagcccaaggaccaactaatctgaggggtccaatcccaccgtcca 43963921  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 429
Target Start/End: Complemental strand, 19174957 - 19174899
Alignment:
Q  371 aattcggtatccggcccaaggacatactaatccgaggggttcaatcccaccgtccattt 429  Q
    |||||||||||||  ||||||||  | |||||||||||| |||||||||||| ||||||    
T  19174957 aattcggtatccgatccaaggaccgattaatccgaggggatcaatcccaccgcccattt 19174899  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 426
Target Start/End: Complemental strand, 35943876 - 35943824
Alignment:
Q  374 tcggtatccggcccaaggacatactaatccgaggggttcaatcccaccgtcca 426  Q
    |||||||  ||||| |||||  ||||||||||||||| |||||||||||||||    
T  35943876 tcggtatttggcccgaggaccaactaatccgaggggtccaatcccaccgtcca 35943824  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 422
Target Start/End: Original strand, 26986090 - 26986138
Alignment:
Q  374 tcggtatccggcccaaggacatactaatccgaggggttcaatcccaccg 422  Q
    ||||||||||||||||||||  |||| |||||||||| |||||||||||    
T  26986090 tcggtatccggcccaaggaccgactattccgaggggtccaatcccaccg 26986138  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 426
Target Start/End: Original strand, 39714655 - 39714707
Alignment:
Q  374 tcggtatccggcccaaggacatactaatccgaggggttcaatcccaccgtcca 426  Q
    ||||||||| ||||||||||  |||||||||||| || |||||||||| ||||    
T  39714655 tcggtatccagcccaaggaccgactaatccgaggagtccaatcccaccatcca 39714707  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 423
Target Start/End: Original strand, 42281102 - 42281151
Alignment:
Q  374 tcggtatccggcccaaggacatactaatccgaggggttcaatcccaccgt 423  Q
    ||||||||||||||||  ||| ||||||||||||||| ||| ||||||||    
T  42281102 tcggtatccggcccaaaaacagactaatccgaggggtccaaccccaccgt 42281151  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 426
Target Start/End: Complemental strand, 6427179 - 6427128
Alignment:
Q  374 tcggtatccggcccaaggacatactaatccgaggggttcaatcccaccgtcca 426  Q
    ||||||||||||| ||||||  ||||||||||||| ||||||||||| |||||    
T  6427179 tcggtatccggcc-aaggaccgactaatccgagggattcaatcccactgtcca 6427128  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 422
Target Start/End: Complemental strand, 26159004 - 26158955
Alignment:
Q  373 ttcggtatccggcccaaggacatactaatccgaggggttcaatcccaccg 422  Q
    |||||||||||  ||||||||  |||||||||||||| ||||||||||||    
T  26159004 ttcggtatccgatccaaggaccgactaatccgaggggatcaatcccaccg 26158955  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 426
Target Start/End: Original strand, 40302651 - 40302703
Alignment:
Q  374 tcggtatccggcccaaggacatactaatccgaggggttcaatcccaccgtcca 426  Q
    ||||||||| ||||||||||  ||||||  ||||||| |||||||||||||||    
T  40302651 tcggtatccagcccaaggaccgactaatttgaggggtccaatcccaccgtcca 40302703  T

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