View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20313_low_6 (Length: 395)
Name: NF20313_low_6
Description: NF20313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20313_low_6 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 4e-63; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 273 - 395
Target Start/End: Complemental strand, 24360262 - 24360140
Alignment:
| Q |
273 |
caaaccgttttctttttcaactagactcatcaaccaaccaactcctctttctgtttctctctcactactcttccctaatttgtaagcaaaccccacaacc |
372 |
Q |
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| T |
24360262 |
caaaccgttttctttttcaactagactcatcaaccaaccaactcctctttctgtttctctctcactactcttccctaatttgtaagcaaaccccacaacc |
24360163 |
T |
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| Q |
373 |
atcaccatcatcattatcatcat |
395 |
Q |
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| T |
24360162 |
atcaccatcatcattatcatcat |
24360140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 24360550 - 24360499
Alignment:
| Q |
25 |
tcattatgtgaagtggaagcaaataacttggcttcattataaaacaaagttg |
76 |
Q |
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| T |
24360550 |
tcattatgtgaagtggaagcaaataacttggcttcattataaaacaaagttg |
24360499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 24360347 - 24360300
Alignment:
| Q |
192 |
caaggccatggagtcaaagacaagaagacacacacacatctaaatatt |
239 |
Q |
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| T |
24360347 |
caaggccatggagtcaaagacaagaagacacacacacatctaaatatt |
24360300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 24360420 - 24360376
Alignment:
| Q |
119 |
ctggcacactgtgattcatgtatgatgattaccttgtgagtgaag |
163 |
Q |
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| T |
24360420 |
ctggcacactgtgattcatgtatgatgattaccttgtgagtgaag |
24360376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 41832479 - 41832434
Alignment:
| Q |
27 |
attatgtgaagtggaagcaaataacttggcttcattataaaacaaa |
72 |
Q |
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| T |
41832479 |
attatgtgaagtggaagcaaaaaacttagcttggttataaaacaaa |
41832434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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