View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20313_low_8 (Length: 345)
Name: NF20313_low_8
Description: NF20313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20313_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 327
Target Start/End: Complemental strand, 3807921 - 3807616
Alignment:
| Q |
16 |
ctacatacatcattgtcgcgtatgcattcttgtatttgtatttctgtgtagacgtagcttcaatggaaggtgctaaggagaaaacatgacataacacaag |
115 |
Q |
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| T |
3807921 |
ctacatacatcattgtcgcgtatgcattcttgtatttgtatttctgtgtagacgtagcttcaatggaaggtgctaaggagaaaacatgacataacacaag |
3807822 |
T |
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| Q |
116 |
tgataatagcagtaacgatttgagagtatttgcattgtgacccattgtaaaaggattagtataagtaatgatttgcatttgtgtctgcacttataagagg |
215 |
Q |
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| T |
3807821 |
tgataatagcagtaacgatttgagagtatttgcattgtgacccattgtaaaaggattagtataagtaatgatttgcatttgtgtctgcacttataagagg |
3807722 |
T |
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| Q |
216 |
attatatagtagtagtatagtattaatattagcgtgtggcgtgtagggaatgcgaaagtttcaagtggagtagtattaaaaagactatagtagcattata |
315 |
Q |
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| T |
3807721 |
attatat------agtatagtattaatattagcgtgtggcgtgtagggaatgcgaaagtttcaagtggagtagtattaaaaagactatagtagcattata |
3807628 |
T |
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| Q |
316 |
gagaggggagaa |
327 |
Q |
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|||||||||||| |
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| T |
3807627 |
gagaggggagaa |
3807616 |
T |
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