View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20313_low_9 (Length: 343)
Name: NF20313_low_9
Description: NF20313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20313_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 26 - 163
Target Start/End: Original strand, 52821100 - 52821237
Alignment:
| Q |
26 |
ctgtcacatacatacattctgagatggattcgaggggtgtccgacaaaatgagatagatagagttgatgtgcctagttttctatctgtcttcaccttttg |
125 |
Q |
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| T |
52821100 |
ctgtcacatacatacattctgagatggattcgaggggtgtccgacaaaatgagatagatagagttgatgtgcctagttttcaatctgtcttcaccttttg |
52821199 |
T |
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| Q |
126 |
ttcattccaactcaatcattcccatgcttacacctcag |
163 |
Q |
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| T |
52821200 |
ttcattccaactcaatcattcccatgcttacacctcag |
52821237 |
T |
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Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 226 - 321
Target Start/End: Original strand, 52821300 - 52821398
Alignment:
| Q |
226 |
ctaattgtattagttct---tttatttctaaattcaaatatatttctacgagttatttaaaaagatttagctatgttcttaagaaactagtaattaatt |
321 |
Q |
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| T |
52821300 |
ctaattgtattagttctaattttatttctaaattcaaatatatttctacgagttatttaaaaagatttagctatgttcttaagaaactagtaattaatt |
52821398 |
T |
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