View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20314_high_1 (Length: 745)
Name: NF20314_high_1
Description: NF20314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20314_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 176; Significance: 2e-94; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 158 - 357
Target Start/End: Complemental strand, 35678868 - 35678669
Alignment:
| Q |
158 |
gttgattccatttcatatgatatattttagagtgaagatccaatttagtccttcacaattttctcgtgacccaatttaatctataaaacaaaattgaaac |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35678868 |
gttgattccatttcatatgatatattttagagtgaagatccaatttagtccttcacaattttctcgtgacccaatttaatctataagacaaaattgaaac |
35678769 |
T |
|
| Q |
258 |
tcaaagtagtctctaacctttacatacgaaggacaaataagtcaatttattacaatgaattgtctagttcctctcaaaattgaagggtcggaatgagtta |
357 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
35678768 |
tcaaagtagtctctaacttttacacacgaaggacaaataagtccatttattacaatgaattgtctagttcctctcaaaattaaagggtcagaatgagtta |
35678669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 591 - 745
Target Start/End: Complemental strand, 35678454 - 35678300
Alignment:
| Q |
591 |
tgaagactattcctttgattctaatgggttgtggaggagttggttctcaccttctccaacacattgtctcatcccgttctctccactcttcacaggtaat |
690 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35678454 |
tgaagactattcctttgattctaatgggttgtggaggagttggttctcaccttctccaacacattgtctcatcccgttctctccactcttcacaggtaat |
35678355 |
T |
|
| Q |
691 |
cgattctcatgtttctcattctgttttaatttccttgtatatcttcattcttctc |
745 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35678354 |
cgattctcatgtttctcattctgttttaatttccttgtatatcttcattcttctc |
35678300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 400 - 545
Target Start/End: Complemental strand, 35678621 - 35678477
Alignment:
| Q |
400 |
tattattatgcttatatcaaaattctcatttcacattcacacagacacagactacagttcccttactactttacatacattcccacgaactgcttcttcc |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35678621 |
tattattatgcttatatcaaaattctcatttcacattcacacagacacagactatagttcccttactactt-acatacattcccacgaactgcttcttcc |
35678523 |
T |
|
| Q |
500 |
attattccatttcataaaatccataaaattcaatttgcaactctaa |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35678522 |
attattccatttcataaaatccataaaattcaatttgcaactctaa |
35678477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 35679000 - 35678930
Alignment:
| Q |
17 |
gttgtaagttgaaacacaatctccataatatttatccttgaaaattaatgatttgataatacaaaaccctc |
87 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35679000 |
gttgaaagttgaaacacaatcctcataatatttatccttgaaaattaatgatttgataatacaaaaacctc |
35678930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 21206812 - 21206863
Alignment:
| Q |
186 |
agagtgaagatccaatttagtccttcacaattttctcgtgacccaatttaat |
237 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||| |||| ||||||||||| |
|
|
| T |
21206812 |
agagtgaagactcaatttagtccttcacagttttcccgtggcccaatttaat |
21206863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University