View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20314_high_14 (Length: 409)

Name: NF20314_high_14
Description: NF20314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20314_high_14
NF20314_high_14
[»] chr2 (14 HSPs)
chr2 (18-401)||(9142855-9143234)
chr2 (131-262)||(33019093-33019224)
chr2 (100-242)||(8800602-8800746)
chr2 (124-199)||(6074468-6074543)
chr2 (107-265)||(22536012-22536173)
chr2 (178-261)||(32596009-32596092)
chr2 (107-153)||(12850719-12850765)
chr2 (135-244)||(13912822-13912931)
chr2 (107-207)||(15928371-15928471)
chr2 (180-258)||(5533017-5533095)
chr2 (178-231)||(11504046-11504099)
chr2 (157-214)||(43501188-43501245)
chr2 (134-210)||(26031975-26032051)
chr2 (194-250)||(33502266-33502322)
[»] chr3 (8 HSPs)
chr3 (132-258)||(52141186-52141312)
chr3 (105-263)||(25359485-25359643)
chr3 (173-258)||(31708218-31708303)
chr3 (107-258)||(52364072-52364223)
chr3 (84-182)||(8802079-8802177)
chr3 (107-209)||(21261223-21261324)
chr3 (135-209)||(46551208-46551283)
chr3 (83-152)||(44225636-44225705)
[»] chr6 (6 HSPs)
chr6 (105-258)||(4910929-4911082)
chr6 (134-244)||(25195306-25195416)
chr6 (132-263)||(6895888-6896019)
chr6 (107-222)||(16540164-16540279)
chr6 (133-258)||(3482067-3482192)
chr6 (185-253)||(17225878-17225946)
[»] chr4 (16 HSPs)
chr4 (107-258)||(53713475-53713625)
chr4 (107-259)||(1616410-1616561)
chr4 (136-244)||(39386668-39386776)
chr4 (107-195)||(2326283-2326371)
chr4 (105-258)||(33456395-33456546)
chr4 (148-258)||(45011895-45012005)
chr4 (107-258)||(21691124-21691276)
chr4 (178-262)||(32818354-32818438)
chr4 (167-244)||(33347143-33347220)
chr4 (178-258)||(8604606-8604686)
chr4 (188-262)||(2326805-2326879)
chr4 (83-145)||(40286345-40286407)
chr4 (107-145)||(43385315-43385353)
chr4 (178-250)||(35065092-35065164)
chr4 (106-169)||(37626104-37626168)
chr4 (194-258)||(52965854-52965918)
[»] chr7 (10 HSPs)
chr7 (105-262)||(28724963-28725120)
chr7 (128-258)||(45997708-45997840)
chr7 (178-258)||(42816452-42816532)
chr7 (82-152)||(32683695-32683765)
chr7 (83-145)||(43186543-43186605)
chr7 (181-259)||(9480596-9480672)
chr7 (178-244)||(25156235-25156301)
chr7 (134-170)||(22198192-22198228)
chr7 (134-170)||(22239593-22239629)
chr7 (178-226)||(32295237-32295285)
[»] chr5 (6 HSPs)
chr5 (132-244)||(42858143-42858255)
chr5 (109-258)||(18850997-18851146)
chr5 (122-258)||(38845464-38845601)
chr5 (180-263)||(6951291-6951374)
chr5 (107-161)||(38265052-38265106)
chr5 (104-152)||(2868332-2868380)
[»] scaffold0168 (2 HSPs)
scaffold0168 (107-258)||(31847-32001)
scaffold0168 (107-152)||(32035-32080)
[»] chr1 (12 HSPs)
chr1 (107-258)||(30557525-30557674)
chr1 (178-262)||(28083872-28083956)
chr1 (178-253)||(34915092-34915167)
chr1 (135-237)||(3909903-3910005)
chr1 (83-152)||(4347069-4347138)
chr1 (180-244)||(34721826-34721890)
chr1 (124-199)||(32433683-32433758)
chr1 (83-148)||(42024-42090)
chr1 (178-211)||(1416205-1416238)
chr1 (178-263)||(3016178-3016263)
chr1 (178-258)||(1514364-1514444)
chr1 (174-210)||(5268288-5268324)
[»] chr8 (13 HSPs)
chr8 (107-244)||(38868778-38868914)
chr8 (135-214)||(36200071-36200149)
chr8 (178-258)||(32927913-32927993)
chr8 (107-253)||(6026962-6027108)
chr8 (193-259)||(13384653-13384719)
chr8 (167-237)||(32736504-32736574)
chr8 (178-244)||(40769351-40769417)
chr8 (161-259)||(40848037-40848135)
chr8 (178-258)||(26100130-26100210)
chr8 (100-210)||(7644638-7644748)
chr8 (113-251)||(37684433-37684570)
chr8 (185-258)||(38868519-38868592)
chr8 (174-210)||(5859043-5859079)


Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 401
Target Start/End: Complemental strand, 9143234 - 9142855
Alignment:
Q  18 atcaatacatatagtaatatttttagaagaaagaattataaaaattgtctcataaagcctatgtatgtgtttgactgtgcgttggaaaaaattgatttta 117  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||| |||||||||||||||||||    
T  9143234 atcaatacatatagtaatatatttagaagaaagaattataaaaattgtctcataaagcctatgtatgt--ttggctgtgcattggaaaaaattgatttta 9143137  T
Q  118 ataaaattgattatatagaattgattttagttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatgtaaatgtgagttgaattatgaa 217  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9143136 ataaaattgattatgtagaattgattttagttaaatgtaattttgactaaaaatggtttttgtttgaatacattcatgtaaatgtgagttgaattatgaa 9143037  T
Q  218 tatgtgtgtgaaaattaattatagaatctaaagctataaattctaaatcaattctaaatatgttagaatcagttctatatttcccgaatcaattttgatt 317  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||| ||| ||||||||||||||     
T  9143036 tatgtgtgtgaaaattaattatagaatttaaagctataaattctaaatcaattctaaacatgttagaatgagttctatatctccagaatcaattttgatc 9142937  T
Q  318 gatttaaaagttggaaccaaacatacactattatcttgagacacaagttgacaatacctccttttccaacatttattttattgt 401  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9142936 gatttaaaagttggaatcaaacatacac--ttatcttgagacacaagttgacaatacctccttttccaacatttattttattgt 9142855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 262
Target Start/End: Original strand, 33019093 - 33019224
Alignment:
Q  131 tatagaattgattttagttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatgtaaatgtgagttgaattatgaatatgtgtgtgaaa 230  Q
    ||||||||||||||| |||||| || ||||||||||||| |  ||| |||||| || |||||||||||| |||||||||| ||| ||| | |||||||||    
T  33019093 tatagaattgattttggttaaaagtgattctgactaaaagtgatttgtgtttggatgcattcatgtaaaagtgagttgaactataaatttatgtgtgaaa 33019192  T
Q  231 attaattatagaatctaaagctataaattcta 262  Q
    || |||| || || | ||||||| ||||||||    
T  33019193 atcaattctaaaaccaaaagctacaaattcta 33019224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 100 - 242
Target Start/End: Original strand, 8800602 - 8800746
Alignment:
Q  100 tggaaaaaattgattttaataaaattgattatatagaattgattttagttaaatgtaattctgactaaaaat--agtttttgtttgaatacattcatgta 197  Q
    ||||||||||||||||| ||| |||  ||| | |||||||||||||| ||||| |||||| |   |||||||  | ||| |||||| |||| ||||||||    
T  8800602 tggaaaaaattgattttgatataatcaattttgtagaattgattttaattaaaagtaattttttttaaaaatgtaatttatgtttggatacgttcatgta 8800701  T
Q  198 aatgtgagttgaattatgaatatgtgtgtgaaaattaattataga 242  Q
    || |||||||||||||| ||| ||| | | ||||| |||||||||    
T  8800702 aaagtgagttgaattataaatttgtatattaaaatcaattataga 8800746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 6074468 - 6074543
Alignment:
Q  124 ttgattatatagaattgattttagttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatgtaaa 199  Q
    |||||| | ||||||||||||| |||| | || |||||||||||||||| ||||| |||| |||||||||||||||    
T  6074468 ttgattttgtagaattgattttggttagaagtcattctgactaaaaataatttttatttggatacattcatgtaaa 6074543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 107 - 265
Target Start/End: Complemental strand, 22536173 - 22536012
Alignment:
Q  107 aattgattttaataaaattgattatatag---aattgattttagttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatgtaaatgtg 203  Q
    |||||||||| ||| |||||||||| ||    |||||||||| ||| || ||| |||| ||||||| |  ||| |||||| ||||||| |||||||  ||    
T  22536173 aattgattttgatagaattgattatgtattataattgattttggttgaaagtatttctaactaaaagtgatttgtgtttggatacatttatgtaaaaatg 22536074  T
Q  204 agttgaattatgaatatgtgtgtgaaaattaattatagaatctaaagctataaattctaaat 265  Q
    |||| || ||| ||||||||||  |||||||||| || |||| ||||||  |||||||||||    
T  22536073 agtttaactataaatatgtgtgcaaaaattaattctaaaatcaaaagcttcaaattctaaat 22536012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 32596092 - 32596009
Alignment:
Q  178 tgtttgaatacattcatgtaaatgtgagttgaattatgaatatgtgtgtgaaaattaattatagaatctaaagctataaattct 261  Q
    |||||| ||| ||| ||||||| |||||||||||||||||| ||| ||| ||||| |||| ||||||| |||| || |||||||    
T  32596092 tgtttggatatatttatgtaaaagtgagttgaattatgaatttgtatgtaaaaatcaattttagaatcaaaagttacaaattct 32596009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 153
Target Start/End: Complemental strand, 12850765 - 12850719
Alignment:
Q  107 aattgattttaataaaattgattatatagaattgattttagttaaat 153  Q
    |||||||||||||| |||||||||| ||||||||||||| |||||||    
T  12850765 aattgattttaatagaattgattatgtagaattgattttggttaaat 12850719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 135 - 244
Target Start/End: Complemental strand, 13912931 - 13912822
Alignment:
Q  135 gaattgattttagttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatgtaaatgtgagttgaattatgaatatgtgtgtgaaaatta 234  Q
    ||||||||||| ||||||  |||||||||| |||| |  ||| |||||| ||||| |||||||||  |||||||||   | ||| ||||||| |||||||    
T  13912931 gaattgattttggttaaaattaattctgacaaaaagtgatttgtgtttggatacaatcatgtaaaaatgagttgaacggtaaatttgtgtgtaaaaatta 13912832  T
Q  235 attatagaat 244  Q
    ||| ||||||    
T  13912831 attctagaat 13912822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 207
Target Start/End: Original strand, 15928371 - 15928471
Alignment:
Q  107 aattgattttaataaaattgattatatagaattgattttagttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatgtaaatgtgagt 206  Q
    ||||||||||  || |||| ||| | ||||||||||||| |||||| |||||||| ||||||| | |||| |||| | |||| ||| |||||| ||||||    
T  15928371 aattgattttggtataattaattctgtagaattgattttggttaaaagtaattctaactaaaagtggtttgtgttgggatacgttcgtgtaaaagtgagt 15928470  T
Q  207 t 207  Q
    |    
T  15928471 t 15928471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 258
Target Start/End: Original strand, 5533017 - 5533095
Alignment:
Q  180 tttgaatacattcatgtaaatgtgagttgaattatgaatatgtgtgtgaaaattaattatagaatctaaagctataaat 258  Q
    |||| |||| ||||||||||||||||||||||||| ||| | |||||  |||| ||||  |||||| ||||||| ||||    
T  5533017 tttggatacgttcatgtaaatgtgagttgaattataaatttatgtgtttaaatcaatttaagaatcaaaagctacaaat 5533095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 11504046 - 11504099
Alignment:
Q  178 tgtttgaatacattcatgtaaatgtgagttgaattatgaatatgtgtgtgaaaa 231  Q
    ||||| |||||||||||||||| |||||||||| ||| | | ||||||||||||    
T  11504046 tgttttaatacattcatgtaaaagtgagttgaactataactttgtgtgtgaaaa 11504099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 43501245 - 43501188
Alignment:
Q  157 attctgactaaaaatagtttttgtttgaatacattcatgtaaatgtgagttgaattat 214  Q
    ||||||||||||| |  ||| |||||| |||||||||||||||  |||||||||||||    
T  43501245 attctgactaaaagtgatttgtgtttgtatacattcatgtaaaactgagttgaattat 43501188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 26031975 - 26032051
Alignment:
Q  134 agaattgattttagttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatgtaaatgtgagttgaa 210  Q
    |||||||||||||||||||  | ||| |||||||||||  ||| ||| |||||||||   |||||| ||||||||||    
T  26031975 agaattgattttagttaaaaatgattttgactaaaaatcatttgtgtgtgaatacatatgtgtaaaagtgagttgaa 26032051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 33502322 - 33502266
Alignment:
Q  194 tgtaaatgtgagttgaattatgaatatgtgtgtgaaaattaattatagaatctaaag 250  Q
    |||||| |||||||||| ||| ||||||||||| ||||| |||| ||||||| ||||    
T  33502322 tgtaaaagtgagttgaactataaatatgtgtgtaaaaatcaattttagaatcaaaag 33502266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 132 - 258
Target Start/End: Original strand, 52141186 - 52141312
Alignment:
Q  132 atagaattgattttagttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatgtaaatgtgagttgaattatgaatatgtgtgtgaaaa 231  Q
    |||||||| |||||  ||||| |||||||||||||||| |||||| ||||| ||||||||||| |||| |||||||||| ||| | ||||||||||||||    
T  52141186 atagaattaattttgattaaaagtaattctgactaaaagtagtttgtgtttaaatacattcatataaaagtgagttgaactataattatgtgtgtgaaaa 52141285  T
Q  232 ttaattatagaatctaaagctataaat 258  Q
    |||||| ||||||| || |||| ||||    
T  52141286 ttaattctagaatcgaatgctacaaat 52141312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 105 - 263
Target Start/End: Original strand, 25359485 - 25359643
Alignment:
Q  105 aaaattgattttaataaaattgattatatagaattgattttagttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatgtaaatgtga 204  Q
    |||||||||||| ||| |||||||| |||| ||| |||||| ||||||  |||||||||| |||| |  ||| |||||| |||||||||| || | ||||    
T  25359485 aaaattgattttgatagaattgattttatataatcgattttggttaaaaataattctgacaaaaagtgatttgtgtttggatacattcatatagaagtga 25359584  T
Q  205 gttgaattatgaatatgtgtgtgaaaattaattatagaatctaaagctataaattctaa 263  Q
     || ||  || ||||||||||||||||| |||||||||||  ||| ||| |||||||||    
T  25359585 ttttaacaataaatatgtgtgtgaaaatcaattatagaataaaaaactacaaattctaa 25359643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 31708218 - 31708303
Alignment:
Q  173 gtttttgtttgaatacattcatgtaaatgtgagttgaattatgaatatgtgtgtgaaaattaattatagaatctaaagctataaat 258  Q
    |||| |||||| ||||||||||||||| |||||||||||||| ||| ||||||| | ||| |||| ||||||| ||||||| ||||    
T  31708218 gtttgtgtttggatacattcatgtaaaagtgagttgaattataaatttgtgtgttagaatcaattctagaatcaaaagctacaaat 31708303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 107 - 258
Target Start/End: Complemental strand, 52364223 - 52364072
Alignment:
Q  107 aattgattttaataaaattgattatatagaattgattttagttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatgtaaatgtgagt 206  Q
    |||||||||| |||  ||||||| | ||||| || | ||||||||| |||||||| | ||||| |  ||| ||||| ||||  || ||||||| ||||||    
T  52364223 aattgattttgatagtattgattgtgtagaaatgttgttagttaaaagtaattctaattaaaattgatttgtgtttaaataattttatgtaaaagtgagt 52364124  T
Q  207 tgaattatgaatatgtgtgtgaaaattaattatagaatctaaagctataaat 258  Q
    |||| | | ||| | ||| ||||||| |||||||||||| ||||||||||||    
T  52364123 tgaactgtaaatttatgtttgaaaatcaattatagaatcaaaagctataaat 52364072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 84 - 182
Target Start/End: Complemental strand, 8802177 - 8802079
Alignment:
Q  84 gtgtttgactgtgcgttggaaaaaattgattttaataaaattgattatatagaattgattttagttaaatgtaattctgactaaaaatagtttttgttt 182  Q
    |||||||| ||| || | |||| ||||||||||||||||||||||| | ||||||||||||| |||||| || |||  || ||||||| |||| |||||    
T  8802177 gtgtttgattgttcggtagaaagaattgattttaataaaattgattgtgtagaattgattttggttaaacgtgatttagattaaaaatggtttgtgttt 8802079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 107 - 209
Target Start/End: Original strand, 21261223 - 21261324
Alignment:
Q  107 aattgattttaataaaattgattatatagaattgattttagttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatgtaaatgtgagt 206  Q
    |||||||||| |||||||||||||| ||||||||||||| |||||| ||||||  || | ||| | |||| || ||| ||||||||||||||| || |||    
T  21261223 aattgattttgataaaattgattatgtagaattgattttggttaaaagtaatttggatttaaagtggtttgtg-ttggatacattcatgtaaaagtaagt 21261321  T
Q  207 tga 209  Q
    |||    
T  21261322 tga 21261324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 46551208 - 46551283
Alignment:
Q  135 gaattgattttagttaaatgtaattctgactaaaaa-tagtttttgtttgaatacattcatgtaaatgtgagttga 209  Q
    ||||||||||| |||||| ||| ||| |||| |||| || ||||||||||||||||||||| |||| |||||||||    
T  46551208 gaattgattttggttaaaagtacttccgacttaaaagtaatttttgtttgaatacattcatataaaagtgagttga 46551283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 44225705 - 44225636
Alignment:
Q  83 tgtgtttgactgtgcgttggaaaaaattgattttaataaaattgattatatagaattgattttagttaaa 152  Q
    ||||||||  |||| | |||| |||||||||||||||| |||||||| | ||||||||||||| ||||||    
T  44225705 tgtgtttggttgtgtggtggagaaaattgattttaatataattgattttgtagaattgattttcgttaaa 44225636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 105 - 258
Target Start/End: Complemental strand, 4911082 - 4910929
Alignment:
Q  105 aaaattgattttaataaaattgattatatagaattgattttagttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatgtaaatgtga 204  Q
    |||||||||||| ||| |||||||| | ||||||| ||||| |||||| |||||||||||||||| |  ||| |||||| ||||||| ||||||| ||||    
T  4911082 aaaattgattttgatagaattgattctctagaattaattttggttaaaagtaattctgactaaaagtgatttatgtttggatacatttatgtaaaagtga 4910983  T
Q  205 gttgaattatgaatatgtgtgtgaaaattaattatagaatctaaagctataaat 258  Q
    || ||| ||| ||| ||| ||||||||| |||| ||||||| ||||||| ||||    
T  4910982 gtcgaactataaatttgtatgtgaaaatcaattctagaatcaaaagctacaaat 4910929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 134 - 244
Target Start/End: Original strand, 25195306 - 25195416
Alignment:
Q  134 agaattgattttagttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatgtaaatgtgagttgaattatgaatatgtgtgtgaaaatt 233  Q
    |||||||||||||||| || |||||||| | ||||| |  ||| |||||| ||||||| ||||||| |||||||||||| | ||| ||||| |||||||     
T  25195306 agaattgattttagttcaaagtaattctaattaaaagtgatttgtgtttggatacatttatgtaaaagtgagttgaattgtaaatttgtgtatgaaaatc 25195405  T
Q  234 aattatagaat 244  Q
    |||||||||||    
T  25195406 aattatagaat 25195416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 263
Target Start/End: Original strand, 6895888 - 6896019
Alignment:
Q  132 atagaattgattttagttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatgtaaatgtgagttgaattatgaatatgtgtgtgaaaa 231  Q
    |||||||||||||| ||||||  ||||| ||||||||| | |||| | |||  ||||||||||||||| |||| || |  ||| |||| ||||| |||||    
T  6895888 atagaattgattttggttaaaactaattttgactaaaagtggtttgttttttgatacattcatgtaaaagtgaatttatctataaatacgtgtgcgaaaa 6895987  T
Q  232 ttaattatagaatctaaagctataaattctaa 263  Q
    | |||| ||||||| ||||||| |||| ||||    
T  6895988 taaattctagaatcaaaagctacaaatcctaa 6896019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 107 - 222
Target Start/End: Complemental strand, 16540279 - 16540164
Alignment:
Q  107 aattgattttaataaaattgattatatagaattgattttagttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatgtaaatgtgagt 206  Q
    |||||||||| ||| |||||||||| ||||||||||||| |||| | |||||||  || | || | |||| |||||| ||||||| ||||||| ||||||    
T  16540279 aattgattttgatagaattgattatgtagaattgattttggttagaagtaattccaaccagaagtggtttgtgtttggatacattgatgtaaaagtgagt 16540180  T
Q  207 tgaattatgaatatgt 222  Q
    | || ||| |||||||    
T  16540179 ttaactataaatatgt 16540164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 258
Target Start/End: Complemental strand, 3482192 - 3482067
Alignment:
Q  133 tagaattgattttagttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatgtaaatgtgagttgaattatgaatatgtgtgtgaaaat 232  Q
    ||||||||||||| ||||||  | ||||| | ||||| |  ||| |||||||||||||||||||||| || ||||||| ||| ||  |||||||||||||    
T  3482192 tagaattgattttggttaaaaatgattctcaataaaagtgatttgtgtttgaatacattcatgtaaaagtaagttgaactataaacttgtgtgtgaaaat 3482093  T
Q  233 taattatagaatctaaagctataaat 258  Q
     |||| || |||| || |||| ||||    
T  3482092 caattctaaaatcaaaggctacaaat 3482067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 253
Target Start/End: Complemental strand, 17225946 - 17225878
Alignment:
Q  185 atacattcatgtaaatgtgagttgaattatgaatatgtgtgtgaaaattaattatagaatctaaagcta 253  Q
    |||||||||||||||  ||||||||| ||| ||| ||| ||| ||||| |||| ||||||| |||||||    
T  17225946 atacattcatgtaaaactgagttgaactataaatttgtatgtaaaaatcaattctagaatcaaaagcta 17225878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 107 - 258
Target Start/End: Original strand, 53713475 - 53713625
Alignment:
Q  107 aattgattttaataaaattgattatatagaattgattttagttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatgtaaatgtgagt 206  Q
    |||| ||||| |||||||||||||| || |||||||||| |||||| |||||| |||||||| ||| ||| |||||| | ||||||||||||| ||||||    
T  53713475 aattcattttgataaaattgattatgtaaaattgatttt-gttaaaagtaattttgactaaacataatttgtgtttggacacattcatgtaaaagtgagt 53713573  T
Q  207 tgaattatgaatatgtgtgtgaaaattaattatagaatctaaagctataaat 258  Q
    |||| |||  |||| | |||| || | |||||||||||| ||||||| ||||    
T  53713574 tgaactatatatatttatgtggaagtcaattatagaatcaaaagctacaaat 53713625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 107 - 259
Target Start/End: Complemental strand, 1616561 - 1616410
Alignment:
Q  107 aattgattttaataaaattgattatatagaattgattttagttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatgtaaatgtgagt 206  Q
    |||||||||| ||| |||||||| | ||||||||||||| ||||||  ||||||| ||||||  | |||| ||||||||||||||||||||||  |||||    
T  1616561 aattgattttgatagaattgattttgtagaattgattttggttaaaattaattctaactaaag-tggtttgtgtttgaatacattcatgtaaaaatgagt 1616463  T
Q  207 tgaattatgaatatgtgtgtgaaaattaattatagaatctaaagctataaatt 259  Q
    |||| | | || |||||||||  ||| |||| ||||||| ||||||| |||||    
T  1616462 tgaactttaaacatgtgtgtgggaatcaattctagaatcaaaagctacaaatt 1616410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 136 - 244
Target Start/End: Complemental strand, 39386776 - 39386668
Alignment:
Q  136 aattgattttagttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatgtaaatgtgagttgaattatgaatatgtgtgtgaaaattaa 235  Q
    |||||||||| |||||| || ||| ||| ||||| | |||||||||| |||| ||||||||||| |||||||||| | | ||||||||||||||||| ||    
T  39386776 aattgatttttgttaaaagtgattttgattaaaagtggtttttgtttaaatatattcatgtaaaagtgagttgaactttaaatatgtgtgtgaaaatcaa 39386677  T
Q  236 ttatagaat 244  Q
    |||||||||    
T  39386676 ttatagaat 39386668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 107 - 195
Target Start/End: Original strand, 2326283 - 2326371
Alignment:
Q  107 aattgattttaataaaattgattatatagaattgattttagttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatg 195  Q
    |||| ||||| ||| |||||||||| || |||||||||| |||||| ||||||| |||||||||| ||||||||||| ||| |||||||    
T  2326283 aattaattttgatataattgattatgtaaaattgatttttgttaaaagtaattcggactaaaaatggtttttgtttggataaattcatg 2326371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 258
Target Start/End: Complemental strand, 33456546 - 33456395
Alignment:
Q  105 aaaattgattttaataaaattgattatatagaattgattttagttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatgtaaatgtga 204  Q
    |||||| ||||||||| |||||||| |  |||||||||||| |||||| |||||| |||| |||| |  ||| ||||||||||| ||  |||||| ||||    
T  33456546 aaaattaattttaatagaattgattctcaagaattgattttggttaaaagtaattttgaccaaaagttatttatgtttgaatacttttgtgtaaaagtga 33456447  T
Q  205 gttgaattatgaatatgtgtgtgaaaattaattatagaatctaaagctataaat 258  Q
     ||||| |||  | || | ||||||||| |||||||||||| ||||||| ||||    
T  33456446 attgaactat--agatttatgtgaaaatcaattatagaatcaaaagctacaaat 33456395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 258
Target Start/End: Complemental strand, 45012005 - 45011895
Alignment:
Q  148 ttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatgtaaatgtgagttgaattatgaatatgtgtgtgaaaattaattatagaatcta 247  Q
    ||||| || ||||| ||||||| | ||||  |||||||||||||||| |||| ||||||  |||||| ||| ||||||||||||| |||| ||||||| |    
T  45012005 ttaaaagtgattctcactaaaagtggtttgggtttgaatacattcatataaaagtgagtaaaattataaatttgtgtgtgaaaatcaattctagaatcaa 45011906  T
Q  248 aagctataaat 258  Q
    |||||| ||||    
T  45011905 aagctacaaat 45011895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 107 - 258
Target Start/End: Original strand, 21691124 - 21691276
Alignment:
Q  107 aattgattttaataaaattgattatatagaattgattttag-ttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatgtaaatgtgag 205  Q
    |||||||||| ||| |||||||| | ||||||  ||||| | ||||| || |||||||||| || |  ||| |||||| ||| ||||||||||| ||| |    
T  21691124 aattgattttgatagaattgattctctagaatgaatttttggttaaaagtgattctgactacaagtgatttgtgtttggatatattcatgtaaaagtgtg 21691223  T
Q  206 ttgaattatgaatatgtgtgtgaaaattaattatagaatctaaagctataaat 258  Q
    ||||| ||| ||| ||||||||||||| |||| || || | ||||||| ||||    
T  21691224 ttgaactataaatttgtgtgtgaaaatcaattctacaaccaaaagctacaaat 21691276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 178 - 262
Target Start/End: Original strand, 32818354 - 32818438
Alignment:
Q  178 tgtttgaatacattcatgtaaatgtgagttgaattatgaatatgtgtgtgaaaattaattatagaatctaaagctataaattcta 262  Q
    |||||| ||||||||||||||| || ||||||| ||| ||| ||||||  ||||| |||| ||||||| ||||||| ||||||||    
T  32818354 tgtttggatacattcatgtaaaagttagttgaactataaatttgtgtgcaaaaatcaattctagaatcaaaagctacaaattcta 32818438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 244
Target Start/End: Original strand, 33347143 - 33347220
Alignment:
Q  167 aaaatagtttttgtttgaatacattcatgtaaatgtgagttgaattatgaatatgtgtgtgaaaattaattatagaat 244  Q
    |||||| |||||||||||||||| ||||||||| |||| ||||| |||  || ||||||  |||||||||||| ||||    
T  33347143 aaaataatttttgtttgaatacaatcatgtaaaagtgaattgaactatatatttgtgtgcaaaaattaattatcgaat 33347220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 8604606 - 8604686
Alignment:
Q  178 tgtttgaatacattcatgtaaatgtgagttgaattatgaatatgtgtgtgaaaattaattatagaatctaaagctataaat 258  Q
    |||||| ||||||||||||||| |||  || || ||| ||| ||||||||||||| |||| ||||||| ||||||| ||||    
T  8604606 tgtttggatacattcatgtaaaagtgcattcaactataaatttgtgtgtgaaaatcaattctagaatcgaaagctacaaat 8604686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 262
Target Start/End: Original strand, 2326805 - 2326879
Alignment:
Q  188 cattcatgtaaatgtgagttgaattatgaatatgtgtgtgaaaattaattatagaatctaaagctataaattcta 262  Q
    |||||||||||| |||||||||| | | ||||||||| ||| |||||||| ||||||  |||| || ||||||||    
T  2326805 cattcatgtaaaggtgagttgaactttaaatatgtgtttgagaattaattctagaattaaaagttacaaattcta 2326879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 145
Target Start/End: Complemental strand, 40286407 - 40286345
Alignment:
Q  83 tgtgtttgactgtgcgttggaaaaaattgattttaataaaattgattatatagaattgatttt 145  Q
    ||||||||  |||||| |||| |||||||||||| ||| || ||||| |||||||||||||||    
T  40286407 tgtgtttggttgtgcggtggacaaaattgattttgatagaactgattctatagaattgatttt 40286345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 43385315 - 43385353
Alignment:
Q  107 aattgattttaataaaattgattatatagaattgatttt 145  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  43385315 aattaattttgataaaattgattatatagaattgatttt 43385353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 35065164 - 35065092
Alignment:
Q  178 tgtttgaatacattcatgtaaatgtgagttgaattatgaatatgtgtgtgaaaattaattatagaatctaaag 250  Q
    |||||| ||||||||||||||| |||||| ||  ||| ||| ||||||| ||||| |||| ||||||| ||||    
T  35065164 tgtttggatacattcatgtaaaagtgagtggagatataaatttgtgtgtaaaaatcaattctagaatcaaaag 35065092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 37626104 - 37626168
Alignment:
Q  106 aaattgattttaataaaa-ttgattatatagaattgattttagttaaatgtaattctgactaaaa 169  Q
    ||||||| ||||||| || || |||||||| ||||| ||||||||||| ||||||| ||||||||    
T  37626104 aaattgagtttaatagaacttaattatataaaattgtttttagttaaaagtaattcagactaaaa 37626168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 258
Target Start/End: Original strand, 52965854 - 52965918
Alignment:
Q  194 tgtaaatgtgagttgaattatgaatatgtgtgtgaaaattaattatagaatctaaagctataaat 258  Q
    |||||| |||||||||||||| ||| | ||||| | ||| |||| ||||||| ||||||||||||    
T  52965854 tgtaaaagtgagttgaattataaatttatgtgttagaatcaattttagaatcaaaagctataaat 52965918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 105 - 262
Target Start/End: Original strand, 28724963 - 28725120
Alignment:
Q  105 aaaattgattttaataaaattgattatatagaattgattttagttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatgtaaatgtga 204  Q
    |||||| ||||| ||| ||| |||||| |||| ||||||||||||||| |||||||| |||||||||| ||| |||||  ||||||  ||||||| || |    
T  28724963 aaaatttattttgatataatcgattatgtagagttgattttagttaaaagtaattctaactaaaaataatttgtgtttagatacatctatgtaaaagtaa 28725062  T
Q  205 gttgaattatgaatatgtgtgtgaaaattaattatagaatctaaagctataaattcta 262  Q
    | |||| | | |||||  |||||| ||| |||||||||||| ||||||| ||||||||    
T  28725063 gctgaactttaaatatacgtgtgagaatcaattatagaatcaaaagctacaaattcta 28725120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 128 - 258
Target Start/End: Complemental strand, 45997840 - 45997708
Alignment:
Q  128 ttatatagaattgattttagttaaatgtaattctgactaaaaatagtttt-tgtttgaatacattcatgtaaatgtgagttgaattatgaatatgtgt-g 225  Q
    |||||||||||||||| | || ||| |||||||| |||||||| |  ||| ||||| |||||||||||| |||   |||||||| ||| ||| ||||| |    
T  45997840 ttatatagaattgattatggtcaaaagtaattctaactaaaaaaatatttgtgtttaaatacattcatgcaaaaaagagttgaactataaatttgtgttg 45997741  T
Q  226 tgaaaattaattatagaatctaaagctataaat 258  Q
    | ||||| |||||||||||| ||||||||||||    
T  45997740 taaaaataaattatagaatcaaaagctataaat 45997708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 42816452 - 42816532
Alignment:
Q  178 tgtttgaatacattcatgtaaatgtgagttgaattatgaatatgtgtgtgaaaattaattatagaatctaaagctataaat 258  Q
    |||||| ||||||||||||| | |||| ||||||||| ||| ||||||||||||| |||| ||||||  |||| |||||||    
T  42816452 tgtttgcatacattcatgtagaagtgaattgaattataaatttgtgtgtgaaaatcaattctagaattaaaagttataaat 42816532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 32683765 - 32683695
Alignment:
Q  82 atgtgtttgactgtgcgttggaaaaaattgattttaataaaattgattatatagaattgattttagttaaa 152  Q
    |||||||||  |||||  ||| ||||||||||||| ||  |||||||||| ||||||||||||||||||||    
T  32683765 atgtgtttggttgtgcagtgggaaaaattgattttgattgaattgattatgtagaattgattttagttaaa 32683695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 43186543 - 43186605
Alignment:
Q  83 tgtgtttgactgtgcgttggaaaaaattgattttaataaaattgattatatagaattgatttt 145  Q
    ||||||||  |||||| |||| |||||||||||| ||| |||||||| |||||||||||||||    
T  43186543 tgtgtttggttgtgcggtggataaaattgattttgatataattgattctatagaattgatttt 43186605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 259
Target Start/End: Original strand, 9480596 - 9480672
Alignment:
Q  181 ttgaatacattcatgtaaatgtgagttgaattatgaatatgtgtgtgaaaattaattatagaatctaaagctataaatt 259  Q
    |||||||||||||| |||| ||||||| |||||| ||| |||| || ||||| ||||||| ||||||| ||||||||||    
T  9480596 ttgaatacattcatttaaaagtgagttaaattataaatttgtgcgt-aaaatcaattata-aatctaaggctataaatt 9480672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 244
Target Start/End: Complemental strand, 25156301 - 25156235
Alignment:
Q  178 tgtttgaatacattcatgtaaatgtgagttgaattatgaatatgtgtgtgaaaattaattatagaat 244  Q
    ||||||||||||||||| |||| ||||||||| |||| ||| | ||||| ||||| |||| ||||||    
T  25156301 tgtttgaatacattcatataaaagtgagttgatttattaatttatgtgtaaaaatcaattctagaat 25156235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 22198228 - 22198192
Alignment:
Q  134 agaattgattttagttaaatgtaattctgactaaaaa 170  Q
    |||||||||||| |||||| |||||||||||||||||    
T  22198228 agaattgattttggttaaaagtaattctgactaaaaa 22198192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 22239593 - 22239629
Alignment:
Q  134 agaattgattttagttaaatgtaattctgactaaaaa 170  Q
    |||||||||||| |||||| |||||||||||||||||    
T  22239593 agaattgattttggttaaaagtaattctgactaaaaa 22239629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 32295285 - 32295237
Alignment:
Q  178 tgtttgaatacattcatgtaaatgtgagttgaattatgaatatgtgtgt 226  Q
    ||||| |||||||| ||||||| |||||||||||||| ||| |||||||    
T  32295285 tgttttaatacatttatgtaaaagtgagttgaattataaatttgtgtgt 32295237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 132 - 244
Target Start/End: Complemental strand, 42858255 - 42858143
Alignment:
Q  132 atagaattgattttagttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatgtaaatgtgagttgaattatgaatatgtgtgtgaaaa 231  Q
    |||||||||||||| ||||||  | ||||||||||||| |  | | |||||||||| ||||||||||| |||||||||| ||| ||| ||||||||||||    
T  42858255 atagaattgattttggttaaaaatgattctgactaaaagtgatctgtgtttgaataaattcatgtaaaagtgagttgaactataaatttgtgtgtgaaaa 42858156  T
Q  232 ttaattatagaat 244  Q
    | |||||||||||    
T  42858155 tcaattatagaat 42858143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 109 - 258
Target Start/End: Original strand, 18850997 - 18851146
Alignment:
Q  109 ttgattttaataaaattgattatatagaattgattttagttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatgtaaatgtgagttg 208  Q
    |||||||| ||| |||||||| |  | |||||||||| |||||| |||||| ||||||||  | |||| |||||| |||  |||||||||| |||||||     
T  18850997 ttgattttgatagaattgattctcaataattgattttggttaaaagtaattttgactaaatgtggtttgtgtttggataacttcatgtaaaagtgagttt 18851096  T
Q  209 aattatgaatatgtgtgtgaaaattaattatagaatctaaagctataaat 258  Q
    || ||| ||||||||||||||||| |||| || |||| ||||||| ||||    
T  18851097 aactataaatatgtgtgtgaaaatcaattctataatcaaaagctacaaat 18851146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 122 - 258
Target Start/End: Complemental strand, 38845601 - 38845464
Alignment:
Q  122 aattgattatatagaattgattttagttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatgt-aaatgtgagttgaattatgaatat 220  Q
    |||||||| | |||||||  |||| ||| || |||||| |||||||||||  ||| |||||| ||| |||||||| ||| ||||||| || |||  || |    
T  38845601 aattgattttgtagaattcgttttggtttaaagtaattatgactaaaaatgatttgtgtttggatatattcatgtaaaaagtgagtttaactatatattt 38845502  T
Q  221 gtgtgtgaaaattaattatagaatctaaagctataaat 258  Q
    |||||||||||| |||| ||||||| ||| ||| ||||    
T  38845501 gtgtgtgaaaatcaattctagaatcaaaaactacaaat 38845464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 180 - 263
Target Start/End: Original strand, 6951291 - 6951374
Alignment:
Q  180 tttgaatacattcatgtaaatgtgagttgaattatgaatatgtgtgtgaaaattaattatagaatctaaagctataaattctaa 263  Q
    |||| ||| ||||||||||| |||| ||||||||| ||| | |||||  |||| |||||||||||| ||||||| |||| ||||    
T  6951291 tttggataaattcatgtaaaagtgaattgaattataaatttatgtgtacaaatcaattatagaatcaaaagctacaaatcctaa 6951374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 161
Target Start/End: Complemental strand, 38265106 - 38265052
Alignment:
Q  107 aattgattttaataaaattgattatatagaattgattttagttaaatgtaattct 161  Q
    |||||||||| |||||||||||| | ||||||||||||| |||||| | ||||||    
T  38265106 aattgattttgataaaattgattttgtagaattgattttggttaaacgcaattct 38265052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 2868332 - 2868380
Alignment:
Q  104 aaaaattgattttaataaaattgattatatagaattgattttagttaaa 152  Q
    |||||||||||||| || |||| ||| | ||||||||||||||||||||    
T  2868332 aaaaattgattttagtagaattaattttgtagaattgattttagttaaa 2868380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 107 - 258
Target Start/End: Complemental strand, 32001 - 31847
Alignment:
Q  107 aattgattttaataaaattgattatatagaattgattttagttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatgtaaatgtgagt 206  Q
    |||||||||| ||| |||||||||| ||||||||||||| |||| | |||||||  |||| || | |||| |||||| ||||||| ||||||| ||||||    
T  32001 aattgattttgatagaattgattatgtagaattgattttggttagaagtaattccaactagaagtggtttgtgtttggatacatttatgtaaaagtgagt 31902  T
Q  207 tg---aattatgaatatgtgtgtgaaaattaattatagaatctaaagctataaat 258  Q
    ||   || ||| ||||||| ||||||||| ||||  | |||| ||||||| ||||    
T  31901 tgtttaactataaatatgtatgtgaaaatcaattcaataatcaaaagctacaaat 31847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 152
Target Start/End: Complemental strand, 32080 - 32035
Alignment:
Q  107 aattgattttaataaaattgattatatagaattgattttagttaaa 152  Q
    |||||||||| ||| |||||||||| ||||||||||||| ||||||    
T  32080 aattgattttgatagaattgattatgtagaattgattttggttaaa 32035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 107 - 258
Target Start/End: Complemental strand, 30557674 - 30557525
Alignment:
Q  107 aattgattttaataaaattgattatatagaattgattttagttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatgtaaatgtgagt 206  Q
    |||||||||| ||| |||||||| | ||||||||||||| |||||| || | |||||||| || |  ||| |||||| |||||||||| |||| ||||||    
T  30557674 aattgattttgatagaattgattctgtagaattgattttggttaaaagtgactctgactagaagtgatttgtgtttggatacattcatataaaagtgagt 30557575  T
Q  207 tgaattatgaatatgtgtgtgaaaattaattatagaatctaaagctataaat 258  Q
    |||| |||  | || ||||||||||| |||| ||||||| ||| ||| ||||    
T  30557574 tgaactat--aaatttgtgtgaaaatcaattctagaatcaaaaactacaaat 30557525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 178 - 262
Target Start/End: Original strand, 28083872 - 28083956
Alignment:
Q  178 tgtttgaatacattcatgtaaatgtgagttgaattatgaatatgtgtgtgaaaattaattatagaatctaaagctataaattcta 262  Q
    |||||| ||| ||||||||||| ||||| |||| |   ||| ||||||| |||||||||||||||||| ||||||| ||||||||    
T  28083872 tgtttggatatattcatgtaaaagtgagctgaacttgaaatttgtgtgtaaaaattaattatagaatcaaaagctacaaattcta 28083956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 253
Target Start/End: Complemental strand, 34915167 - 34915092
Alignment:
Q  178 tgtttgaatacattcatgtaaatgtgagttgaattatgaatatgtgtgtgaaaattaattatagaatctaaagcta 253  Q
    |||||||||||||||||||||| |||||||||||||| ||   |||||| | ||| |||| ||||||| |||||||    
T  34915167 tgtttgaatacattcatgtaaaagtgagttgaattataaaatggtgtgttagaatcaattctagaatcaaaagcta 34915092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 237
Target Start/End: Complemental strand, 3910005 - 3909903
Alignment:
Q  135 gaattgattttagttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatgtaaatgtgagttgaattatgaatatgtgtgtgaaaatta 234  Q
    |||||||| ||  ||||| || ||||| ||||||| || ||| | |||||||| |||| |||||| ||||||| || ||||||| ||||||||||||| |    
T  3910005 gaattgatattgattaaaagtgattctaactaaaagtaatttgtatttgaatagattcgtgtaaacgtgagttaaagtatgaatttgtgtgtgaaaatca 3909906  T
Q  235 att 237  Q
    |||    
T  3909905 att 3909903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 4347138 - 4347069
Alignment:
Q  83 tgtgtttgactgtgcgttggaaaaaattgattttaataaaattgattatatagaattgattttagttaaa 152  Q
    ||||||||  |||||| |||||||||||||||||  || |||||||| | ||||||||||||| ||||||    
T  4347138 tgtgtttggttgtgcggtggaaaaaattgattttggtagaattgattttgtagaattgattttggttaaa 4347069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 34721826 - 34721890
Alignment:
Q  180 tttgaatacattcatgtaaatgtgagttgaattatgaatatgtgtgtgaaaattaattatagaat 244  Q
    |||||||||||| ||||||| || ||| ||| ||| ||| ||||||||||||| |||||||||||    
T  34721826 tttgaatacattgatgtaaaagtaagtcgaactataaatttgtgtgtgaaaatcaattatagaat 34721890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 32433683 - 32433758
Alignment:
Q  124 ttgattatatagaattgattttagttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatgtaaa 199  Q
    |||||| |||| |||| ||||| ||||||  ||||| ||| |||||||||||| |||||||||| ||| |||||||    
T  32433683 ttgattttataaaattaattttggttaaaaataattatgattaaaaatagtttatgtttgaatatatttatgtaaa 32433758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 42090 - 42024
Alignment:
Q  83 tgtgtttgactgtgcgttggaaaaaattgattttaataaaattgattat-atagaattgattttagt 148  Q
    ||||||||| | |||| |||| |||||||||||| |||||||||||| |  ||||||||||||||||    
T  42090 tgtgtttgattctgcggtggagaaaattgattttgataaaattgattttgttagaattgattttagt 42024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 1416205 - 1416238
Alignment:
Q  178 tgtttgaatacattcatgtaaatgtgagttgaat 211  Q
    |||||||||||||||||||||| |||||||||||    
T  1416205 tgtttgaatacattcatgtaaaagtgagttgaat 1416238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 263
Target Start/End: Complemental strand, 3016263 - 3016178
Alignment:
Q  178 tgtttgaatacattcatgtaaatgtgagttgaattatgaatatgtgtgtgaaaattaattatagaatctaaagctataaattctaa 263  Q
    |||||| ||||||||||||||| ||||||||||   | ||| | ||||| || || |||| ||||||| ||||||| |||||||||    
T  3016263 tgtttggatacattcatgtaaaagtgagttgaaccgtaaatttatgtgtaaacatcaattctagaatcaaaagctacaaattctaa 3016178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 258
Target Start/End: Complemental strand, 1514444 - 1514364
Alignment:
Q  178 tgtttgaatacattcatgtaaatgtgagttgaattatgaatatgtgtgtgaaaattaattatagaatctaaagctataaat 258  Q
    |||||| |||||||||||||||  |||||||||  || ||| ||||||| ||||| ||||||| |||  ||||||| ||||    
T  1514444 tgtttggatacattcatgtaaaaatgagttgaacaataaatttgtgtgtaaaaatcaattatataataaaaagctacaaat 1514364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 5268324 - 5268288
Alignment:
Q  174 tttttgtttgaatacattcatgtaaatgtgagttgaa 210  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  5268324 tttttgtttgaatatattcatgtaaaagtgagttgaa 5268288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 107 - 244
Target Start/End: Complemental strand, 38868914 - 38868778
Alignment:
Q  107 aattgattttaataaaattgattatatagaattgattttagttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatgtaaatgtgagt 206  Q
    |||||||||||||| |||||||| | || |||||||||| ||| ||  ||||| | ||||||| |  ||| | ||||||||| |||||||||| ||||||    
T  38868914 aattgattttaatagaattgattctcta-aattgattttggttcaaaataattttcactaaaattgatttatatttgaatacgttcatgtaaaagtgagt 38868816  T
Q  207 tgaattatgaatatgtgtgtgaaaattaattatagaat 244  Q
     ||| ||| ||| |||| |||||||| |||||||||||    
T  38868815 agaactataaatttgtgcgtgaaaatcaattatagaat 38868778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 36200071 - 36200149
Alignment:
Q  135 gaattgattttagttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatgtaaatgtgagttgaattat 214  Q
    ||||||||||| |||||| ||||||||||||||||||  ||| || || |||||||||||||||| |||| |||||||||    
T  36200071 gaattgattttggttaaa-gtaattctgactaaaaatgatttgtgcttcaatacattcatgtaaaagtgaattgaattat 36200149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 178 - 258
Target Start/End: Complemental strand, 32927993 - 32927913
Alignment:
Q  178 tgtttgaatacattcatgtaaatgtgagttgaattatgaatatgtgtgtgaaaattaattatagaatctaaagctataaat 258  Q
    |||||| ||||||||||||||| |||||||||| ||| ||| ||||||| ||||| |||| || |||| ||||||| ||||    
T  32927993 tgtttggatacattcatgtaaaagtgagttgaactataaatttgtgtgtaaaaatgaattctataatcaaaagctacaaat 32927913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 253
Target Start/End: Original strand, 6026962 - 6027108
Alignment:
Q  107 aattgattttaataaaattgattatatagaattgattttagttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatgtaaatgtgagt 206  Q
    |||||||||| |||||||||||  || | ||| |||||| |||||| || ||||| | |||||||  ||| ||||||| ||||| ||||||||  |||||    
T  6026962 aattgattttgataaaattgatattacataatagattttggttaaaagtgattctcattaaaaattatttgtgtttgagtacatccatgtaaaaatgagt 6027061  T
Q  207 tgaattatgaatatgtgtgtgaaaattaattatagaatctaaagcta 253  Q
    | || | | ||| ||| | ||||||| |||| ||||||| |||||||    
T  6027062 taaactgtaaatttgtatatgaaaatcaattctagaatcaaaagcta 6027108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 259
Target Start/End: Original strand, 13384653 - 13384719
Alignment:
Q  193 atgtaaatgtgagttgaattatgaatatgtgtgtgaaaattaattatagaatctaaagctataaatt 259  Q
    ||||||| |||||||||| ||| ||| ||||||||||||| |||| ||||||| ||||||| |||||    
T  13384653 atgtaaaagtgagttgaactataaatttgtgtgtgaaaatcaattctagaatcaaaagctacaaatt 13384719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 237
Target Start/End: Complemental strand, 32736574 - 32736504
Alignment:
Q  167 aaaatagtttttgtttgaatacattcatgtaaatgtgagttgaattatgaatatgtgtgtgaaaattaatt 237  Q
    |||||| ||| | |||||||||||||||||||| |||| ||||| ||| ||| ||||||| ||||||||||    
T  32736574 aaaataatttgtatttgaatacattcatgtaaaagtgaattgaactataaatttgtgtgtaaaaattaatt 32736504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 244
Target Start/End: Original strand, 40769351 - 40769417
Alignment:
Q  178 tgtttgaatacattcatgtaaatgtgagttgaattatgaatatgtgtgtgaaaattaattatagaat 244  Q
    ||||||||||||||  ||||||  ||| ||||||||| ||| ||||||||||||| |||||||||||    
T  40769351 tgtttgaatacatttgtgtaaaattgaattgaattataaatttgtgtgtgaaaatcaattatagaat 40769417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 259
Target Start/End: Complemental strand, 40848135 - 40848037
Alignment:
Q  161 tgactaaaaatagtttttgtttgaatacattcatgtaaatgtgagttgaattatgaatatgtgtgtgaaaattaattatagaatctaaagctataaatt 259  Q
    |||||||||||  ||| |||||||||| |||||| ||||  |||||| |||||| | | ||||||||||||| |||| || |||| |||| ||||||||    
T  40848135 tgactaaaaattatttgtgtttgaatatattcatataaaaatgagtttaattataagtttgtgtgtgaaaatcaattctaaaatcaaaagatataaatt 40848037  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 26100130 - 26100210
Alignment:
Q  178 tgtttgaatacattcatgtaaatgtgagttgaattatgaatatgtgtgtgaaaattaattatagaatctaaagctataaat 258  Q
    |||||| || |||| ||||||| ||||||||||  || ||| ||||||| ||||| |||||||||||| ||||||| ||||    
T  26100130 tgtttggatgcatttatgtaaaagtgagttgaaccataaatttgtgtgtaaaaatcaattatagaatcaaaagctacaaat 26100210  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 210
Target Start/End: Complemental strand, 7644748 - 7644638
Alignment:
Q  100 tggaaaaaattgattttaataaaattgattatatagaattgattttagttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatgtaaa 199  Q
    ||||||||| ||||||  |||||||||||| |||| |||| |||||||||||| || |||||   |||||||  ||| ||||||| ||| ||  ||||||    
T  7644748 tggaaaaaaatgatttcgataaaattgattttataaaattaattttagttaaaagtgattctatttaaaaattatttgtgtttgagtacgtttgtgtaaa 7644649  T
Q  200 tgtgagttgaa 210  Q
      |||||||||    
T  7644648 catgagttgaa 7644638  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 251
Target Start/End: Complemental strand, 37684570 - 37684433
Alignment:
Q  113 ttttaataaaattgattatatagaattgattttagttaaatgtaattctgactaaaaatagtttttgtttgaatacattcatgtaaatgtgagttgaatt 212  Q
    |||| ||| ||||||||||  | |||||||| | ||| || |||||| ||||||||| |  ||| |||||| ||||||| ||||||| ||||||||||||    
T  37684570 ttttgatagaattgattatggataattgattgtggtttaa-gtaattttgactaaaagtgatttgtgtttggatacatttatgtaaaagtgagttgaatt 37684472  T
Q  213 atgaatatgtgtgtgaaaattaattatagaatctaaagc 251  Q
    || ||| | ||  | ||||| |||| ||||||| |||||    
T  37684471 ataaatttttgcattaaaatcaattttagaatcaaaagc 37684433  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 258
Target Start/End: Complemental strand, 38868592 - 38868519
Alignment:
Q  185 atacattcatgtaaatgtgagttgaattatgaatatgtgtgtgaaaattaattatagaatctaaagctataaat 258  Q
    |||||||  ||||||  ||||||||| ||| ||| ||||||||||||| |||||||||| | ||||||| ||||    
T  38868592 atacattattgtaaaattgagttgaactataaatttgtgtgtgaaaatcaattatagaaccaaaagctacaaat 38868519  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 5859043 - 5859079
Alignment:
Q  174 tttttgtttgaatacattcatgtaaatgtgagttgaa 210  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  5859043 tttttgtttgaatgcattcatgtaaaagtgagttgaa 5859079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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