View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20314_high_15 (Length: 404)
Name: NF20314_high_15
Description: NF20314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20314_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 328
Target Start/End: Complemental strand, 192155 - 191856
Alignment:
| Q |
17 |
atgaaaagctgaattaactatggaaaaagatgtagtaatacacattaaatacccctttgaacaaattaaagatgtttgagtcnnnnnnnntaatagacat |
116 |
Q |
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| T |
192155 |
atgaaaagctgaatcaactatggaaaaagatgtagtaatacacattaaatacccctttcaacaaattaaagatgtttgagtcaaaaaaaataatagacat |
192056 |
T |
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| Q |
117 |
agaatgaggttgattcccaggcatggattcacataaactaaggttgtgccactcttgatccgatattttcggtctgtacccttccttccacgtactgatt |
216 |
Q |
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| T |
192055 |
agaatgaggttgattcccagg--tggattcacataaactaaggttgtgccactcttgatccgatattttcggtctgtacccttccttcc----actgatt |
191962 |
T |
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| Q |
217 |
aatgaatccaacttgctttaatatatacatgtgaatgtgatgtatatatcttgatcttgtgctttaatccaacttgtatttatagtattatataaggata |
316 |
Q |
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| T |
191961 |
aatgaatccaacttgctttaatatatac------atgtgatgtatatatcttgatcttgtgctttaatccaacttgtatttatagtattatataaggata |
191868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 351 - 387
Target Start/End: Complemental strand, 191791 - 191755
Alignment:
| Q |
351 |
tatatatgtcattaagttctttttgtggactcaaaac |
387 |
Q |
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| T |
191791 |
tatatatgtcattaagttctttttgtggactcaaaac |
191755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 357
Target Start/End: Complemental strand, 191828 - 191799
Alignment:
| Q |
328 |
ccttcaatatttatcacaaaagttatatat |
357 |
Q |
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| T |
191828 |
ccttcaatatttatcacaaaagttatatat |
191799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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