View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20314_high_19 (Length: 366)
Name: NF20314_high_19
Description: NF20314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20314_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 17 - 353
Target Start/End: Original strand, 930961 - 931297
Alignment:
| Q |
17 |
atgaatgtgtttaccattattatgaagaatgtagtagttttagttatgtattttcctttataatagtnnnnnnnttggatcaaggtgacgttttgcaatt |
116 |
Q |
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| T |
930961 |
atgaatgtgtttaccattattatgaagaatgtagtagttttagttatgtattttcctttataatagtaaaaagattggatcaaggtgacgttttgcaatt |
931060 |
T |
|
| Q |
117 |
tgttctgtagtcttggtttattatgcatctannnnnnnctttcgtcaacctgtgactcatgtttttcatgatgatattgtggtttttgcatgatttctga |
216 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
931061 |
tgttctgtagtcttggtttattatgcatctatttttttctttggtcaacctgtgactcatgtttttcatgatgatattgtggtttttgcatgatttctga |
931160 |
T |
|
| Q |
217 |
gcagtgaaggtttgcatgatttgtgaaaatgtcccctgacttggagataaagagccaattggagaatataaacgcccctgcattttcggaactaaatgtt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
931161 |
gcagtgaaggtttgcatgatttgtgaaaatgtcccctgacttggagataaagagccaattggagaatataaacgcccctgcattttcggaactaaatgtt |
931260 |
T |
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| Q |
317 |
cttgagcctatggaaaacggtgaggctgatgattgtg |
353 |
Q |
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|||||||||| |||||||||||||||||||||||||| |
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| T |
931261 |
cttgagcctagggaaaacggtgaggctgatgattgtg |
931297 |
T |
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