View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20314_high_20 (Length: 346)
Name: NF20314_high_20
Description: NF20314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20314_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 31516051 - 31515721
Alignment:
| Q |
1 |
ttaaaaatcacaaattcatcatcccaatatcgaaaagaaaaataacatctcatacatcaccataccattattcccaaggtaacaagtatcagcgttcaag |
100 |
Q |
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| T |
31516051 |
ttaaaaatcacaaattcatcatcccaatatcgaaaagaaaaataacatctcatacatcaccataccattattcccaaggtaacaagtatcagcgttcaag |
31515952 |
T |
|
| Q |
101 |
tttaatagacatttgccacagccaaaaaggtaaacaacacattaaaaccattacagctaatccaaaaaattatattatcaaaccaaatttgtcgcagctg |
200 |
Q |
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| T |
31515951 |
tttaatagacatttgccacagccaaaaaggtaaacaacacattaaaaccattacagctaatccaaaaaattatattatcaaaccaaatttgtcacagctg |
31515852 |
T |
|
| Q |
201 |
tgaaagtttacactagatgtaatttcacaccgaaatgctctatctttacaaaatgaagcgccattcttaagaataaatttctgtacataatttcacattc |
300 |
Q |
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| T |
31515851 |
tgaaagtttacactagatgtaatttcacatcgaaatgctctatctttataaaatgaagcgccattcttaagaataaatttctgtacataatttcacattc |
31515752 |
T |
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| Q |
301 |
acaacaaatgctctatctttatagaatgaag |
331 |
Q |
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| T |
31515751 |
acaaccaatgctctatctttatagaatgaag |
31515721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 31515691 - 31515619
Alignment:
| Q |
220 |
taatttcacaccgaaatgctctatctttacaaaatgaagcgccattcttaagaataaatttctgtacataatt |
292 |
Q |
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| T |
31515691 |
taatttcacaccgaaatgctctatctttacaaaatgaagcaccattcttaagaataaatttctgtacaaaatt |
31515619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 275 - 331
Target Start/End: Complemental strand, 31515616 - 31515560
Alignment:
| Q |
275 |
aaatttctgtacataatttcacattcacaacaaatgctctatctttatagaatgaag |
331 |
Q |
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| T |
31515616 |
aaatttctgtacataatttcacattcacaccatatgctctatctttatagaatgaag |
31515560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 297
Target Start/End: Complemental strand, 31515745 - 31515682
Alignment:
| Q |
234 |
aatgctctatctttacaaaatgaagcgccattcttaagaataaatttctgtacataatttcaca |
297 |
Q |
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| T |
31515745 |
aatgctctatctttatagaatgaagcaccattcttaagaataattttatgtccataatttcaca |
31515682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 297
Target Start/End: Complemental strand, 31515583 - 31515521
Alignment:
| Q |
235 |
atgctctatctttacaaaatgaagcgccattcttaagaataaatttctgtacataatttcaca |
297 |
Q |
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| T |
31515583 |
atgctctatctttatagaatgaagcgccattcataagaataattttctgcacacaatttcaca |
31515521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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