View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20314_high_21 (Length: 336)
Name: NF20314_high_21
Description: NF20314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20314_high_21 |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 12 - 320
Target Start/End: Original strand, 895198 - 895506
Alignment:
| Q |
12 |
aaaggtaagaagacaagttgaattgtttagcaacttcatatgcatctgttgaaaatatactgaagattaaagaaacaaggtaagttttggaaatgagtga |
111 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
895198 |
aaaggtaagaagacaagttaaattgtttggcaacttcatatgcatctgttgaaaatatactgaagattaaagaaacaaggttagttttggaaatgagtga |
895297 |
T |
|
| Q |
112 |
tttaacttcttgttgaagaaatggaatagaatgtttcacaatgagtttcatttgtgctgcaggatcatggctttgttgaatattttttacttgaggaaga |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
895298 |
tttaacttcttgttgaagaaatggaatagaatgtttcacaatgagtttcatttgtgctgcaggatcatggctttgttgaatattttttacttgaggaaga |
895397 |
T |
|
| Q |
212 |
agaatgaagtctatgtttggtggaagattgttcaagacttgttgcattgaaggagtaagaggacaaagtgttggaatgatgaatgtgacaatgaattcat |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
895398 |
agaatgaagtctatgtttggtggaagattgttcaagacttgttgcattgaaggagtaagaggagaaagtgttggaatgatgaatgtgacaatgaattcat |
895497 |
T |
|
| Q |
312 |
tgtgatgtt |
320 |
Q |
| |
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||||||||| |
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| T |
895498 |
tgtgatgtt |
895506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 320
Target Start/End: Complemental strand, 905445 - 905134
Alignment:
| Q |
12 |
aaaggtaagaagacaagttgaattgtttagcaacttcatatgcatctgttgaaaatatactgaagattaaagaaacaaggtaagttttggaaatgagtga |
111 |
Q |
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||||||||||||| || |||||||||||||||||||||| |||||| ||||| |||| || ||||||||||||||||||| |||||||||||||||||| |
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| T |
905445 |
aaaggtaagaagataaattgaattgtttagcaacttcatgtgcatcggttgagaatagaccaaagattaaagaaacaaggttagttttggaaatgagtga |
905346 |
T |
|
| Q |
112 |
tttaacttcttgttgaagaaatggaatagaatgtttcacaatgagtttcatttgtgctgcaggatc---atggctttgttgaatattttttacttgagga |
208 |
Q |
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||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||| || || | | | ||| | ||||||||||||| |
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| T |
905345 |
ttttacttcttcttgtagaaatggaatagaatgtttcacaatgagtttcatttgtgttgcaggttcaagattaatctctggaaggtgttttacttgagga |
905246 |
T |
|
| Q |
209 |
agaagaatgaagtctatgtttggtggaagattgttcaagacttgttgcattgaaggagtaagaggacaaagtgttggaatgatgaatgtgacaatgaatt |
308 |
Q |
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|||| |||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
905245 |
agaacaatgaattctatgtttgggggaagagtgttcaagacttgttgcattgaaggagtaagaggacaaagtgttggaatgatgaatgtgacaatgaatt |
905146 |
T |
|
| Q |
309 |
cattgtgatgtt |
320 |
Q |
| |
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||||||| |||| |
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| T |
905145 |
cattgtgttgtt |
905134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 6e-31; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 28 - 317
Target Start/End: Original strand, 8295157 - 8295452
Alignment:
| Q |
28 |
gttgaattgtttagcaacttcatatgcatctgttgaaaatatactgaagattaaagaaacaaggtaagttttggaaatgagtgatttaacttcttgttga |
127 |
Q |
| |
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|||||| ||||| ||||| |||| |||||| |||||||| || ||||| | ||||| ||| ||| |||||| |||| ||||||||| ||||||| | | |
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| T |
8295157 |
gttgaaatgtttcgcaacatcatgtgcatcggttgaaaacatgctgaaaactaaagcaactaggcgagtttttgaaaggagtgattttacttcttcataa |
8295256 |
T |
|
| Q |
128 |
agaaatggaatagaatgtttcacaatgagtttcatttgtgctgcaggatcatggctttgttgaa------tattttttacttgaggaagaagaatgaagt |
221 |
Q |
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|||||||||||||| |||||||| ||||||||||| |||| |||||||||| | | ||| ||| | | || ||||| ||||||| |||||||| |
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| T |
8295257 |
agaaatggaatagagtgtttcactatgagtttcatctgtgttgcaggatcaagattatgtggaaggtcttcaatgttgacttggggaagaacaatgaagt |
8295356 |
T |
|
| Q |
222 |
ctatgtttggtggaagattgttcaagacttgttgcattgaaggagtaagaggacaaagtgttggaatgatgaatgtgacaatgaattcattgtgat |
317 |
Q |
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||||||||||||||| ||||||||| |||||| |||||||| || |||| |||||| ||||||| |||||||| | | |||||||||||| |
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| T |
8295357 |
tcatgtttggtggaagagtgttcaagatggattgcatggaaggagttagtggaccaagtgtgggaatgaggaatgtgatatggtattcattgtgat |
8295452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 320
Target Start/End: Complemental strand, 33256598 - 33256300
Alignment:
| Q |
28 |
gttgaattgtttagcaacttcatatgcatctgttgaaaatatactgaagattaaagaaacaaggtaagttttggaaatgagtgatttaacttcttgttga |
127 |
Q |
| |
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|||||| |||||||| || || | |||||| |||||||| || ||| | | ||||| |||||||| |||||| |||| |||||||| ||||||| ||| |
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| T |
33256598 |
gttgaaatgtttagctacatcgtgtgcatcggttgaaaacatgctgcaaactaaagcaacaaggttagtttttgaaagaagtgattttacttcttcatga |
33256499 |
T |
|
| Q |
128 |
agaaatggaatagaatgtttcacaatgagtttcatttgtgctgcaggatcatggctttgttgaa------tattttttacttgaggaagaagaatgaagt |
221 |
Q |
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|||||||||||||| |||||||| |||||||||||||||| || ||| ||| | | ||| ||| | | || ||||| ||||||| | |||||| |
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| T |
33256498 |
agaaatggaatagagtgtttcactatgagtttcatttgtgttgaaggttcaagattatgtggaaggtcttcaatgttgacttggggaagaacagtgaagt |
33256399 |
T |
|
| Q |
222 |
ctatgtttggtggaagattgttcaagacttgttgcattgaaggagtaagaggacaaagtgttggaatgatgaatgtgacaatgaattcattgtgatgtt |
320 |
Q |
| |
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|||||||||||||| ||||||||| | |||||| |||||||| || |||| |||||| ||||||| |||||||| | | | ||||||||||||| |
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| T |
33256398 |
tcatgtttggtggaagtgtgttcaagattgattgcatggaaggagttagtggaccaagtgtgggaatgaggaatgtgatatggtactcattgtgatgtt |
33256300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 315
Target Start/End: Complemental strand, 6440567 - 6440492
Alignment:
| Q |
240 |
tgttcaagacttgttgcattgaaggagtaagaggacaaagtgttggaatgatgaatgtgacaatgaattcattgtg |
315 |
Q |
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||||||| ||||| | |||||||||||| ||| ||| || |||||||| || ||||||||||||||| |||||||| |
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| T |
6440567 |
tgttcaatacttgctacattgaaggagtgagacgaccaaatgttggaacgaggaatgtgacaatgaactcattgtg |
6440492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 320
Target Start/End: Complemental strand, 716 - 418
Alignment:
| Q |
28 |
gttgaattgtttagcaacttcatatgcatctgttgaaaatatactgaagattaaagaaacaaggtaagttttggaaatgagtgatttaacttcttgttga |
127 |
Q |
| |
|
|||||| |||||||| || || | |||||| |||||||| || ||| | | ||||| |||||||| |||||| |||| |||||||| ||||||| ||| |
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| T |
716 |
gttgaaatgtttagctacatcgtgtgcatcggttgaaaacatgctgcaaactaaagcaacaaggttagtttttgaaagaagtgattttacttcttcatga |
617 |
T |
|
| Q |
128 |
agaaatggaatagaatgtttcacaatgagtttcatttgtgctgcaggatcatggctttgttgaa------tattttttacttgaggaagaagaatgaagt |
221 |
Q |
| |
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|||||||||||||| |||||||| |||||||||||||||| || ||| ||| | | ||| ||| | | || ||||| ||||||| | |||||| |
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| T |
616 |
agaaatggaatagagtgtttcactatgagtttcatttgtgttgaaggttcaagattatgtggaaggtcttcaatgttgacttggggaagaacagtgaagt |
517 |
T |
|
| Q |
222 |
ctatgtttggtggaagattgttcaagacttgttgcattgaaggagtaagaggacaaagtgttggaatgatgaatgtgacaatgaattcattgtgatgtt |
320 |
Q |
| |
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|||||||||||||| ||||||||| | |||||| |||||||| || |||| |||||| ||||||| |||||||| | | | ||||||||||||| |
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| T |
516 |
tcatgtttggtggaagtgtgttcaagattgattgcatggaaggagttagtggaccaagtgtgggaatgaggaatgtgatatggtactcattgtgatgtt |
418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 315
Target Start/End: Original strand, 34765242 - 34765317
Alignment:
| Q |
240 |
tgttcaagacttgttgcattgaaggagtaagaggacaaagtgttggaatgatgaatgtgacaatgaattcattgtg |
315 |
Q |
| |
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|||||||| ||| ||||||||| |||| |||||| ||||||||||| || ||||||||||||||| |||||||| |
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| T |
34765242 |
tgttcaaggtttgatgcattgaaagagtgagaggatcaagtgttggaacgaggaatgtgacaatgaactcattgtg |
34765317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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