View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20314_high_23 (Length: 331)
Name: NF20314_high_23
Description: NF20314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20314_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 327
Target Start/End: Original strand, 49517991 - 49518287
Alignment:
| Q |
17 |
agaagcagatgagttcctcattgaggaaccttgtgttaagaagaggaagaaagcacaaatgagtaaaaatgacaaagatcataataacctccaacacatg |
116 |
Q |
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| T |
49517991 |
agaagcagatgagttcctcattgaggaaccttgtgttaagaagaggaagaaagcacaaatgagtaaaaatgacaaagatcataataacctccaacacatg |
49518090 |
T |
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| Q |
117 |
gatatggttgctgttgacaaagcaagcaaagaagagcttgaactattgcttgctgatgacaaggggatagaaactggtctcaagggatataatctaaaat |
216 |
Q |
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| T |
49518091 |
gatatggttgctgttgacaaagc--------------ttgaactattgcttcctgatgacaaggggatagaaactggtctcaagggatataatctaaaat |
49518176 |
T |
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| Q |
217 |
ttnnnnnnnggaaggacaaaatggggaaggagaatgttattattgatgagggtaaagtaccaaacagtacatatagtgatgatcaacgttttgttgcact |
316 |
Q |
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| T |
49518177 |
ttaaaaaaaggaaggacaaaatggggaaggagaatgttattattgatgagggtaaagtaccaaacagtacatatagtgatgatcaacgttttgttgcact |
49518276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 114 - 309
Target Start/End: Original strand, 27747445 - 27747640
Alignment:
| Q |
114 |
atggatatggttgctgttgacaaagcaagcaaagaagagcttgaactattgcttgctgatgacaaggggatagaaactggtctcaagggatataatctaa |
213 |
Q |
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| T |
27747445 |
atggatatagttgctgttgacaaagcaagcaaagaagagcttgagttattgcttgctgatgacaaggcgacagaaactggtctcaaaggatatagtctaa |
27747544 |
T |
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| Q |
214 |
aatttnnnnnnnggaaggacaaaatggggaaggagaatgttattattgatgagggtaaagtaccaaacagtacatatagtgatgatcaacgttttg |
309 |
Q |
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| T |
27747545 |
aatttaaaaaaaggaaggacaaaatgggaaaggagaatgttattattgatgagggtaaagttccaaacagtacatatagtgatgatccacgttttg |
27747640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 134 - 211
Target Start/End: Complemental strand, 38527452 - 38527375
Alignment:
| Q |
134 |
caaagcaagcaaagaagagcttgaactattgcttgctgatgacaaggggatagaaactggtctcaagggatataatct |
211 |
Q |
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| T |
38527452 |
caaagcaagcaaagaagagcttgaactgttgcttgctgatgacaaggggacaggtactggtctcaagggatataatct |
38527375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 27747383 - 27747440
Alignment:
| Q |
34 |
tcattgaggaaccttgtgttaagaagaggaagaaagcacaaatgagtaaaaatgacaa |
91 |
Q |
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| T |
27747383 |
tcattgaggaacctagtgttaagaagaggaagaagacagaaaagagtaaaactgacaa |
27747440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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