View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20314_high_26 (Length: 319)

Name: NF20314_high_26
Description: NF20314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20314_high_26
NF20314_high_26
[»] chr7 (9 HSPs)
chr7 (1-298)||(2008958-2009255)
chr7 (5-296)||(33796499-33796790)
chr7 (8-298)||(7377450-7377736)
chr7 (5-298)||(27941624-27941917)
chr7 (23-298)||(34518734-34519009)
chr7 (23-175)||(17804681-17804833)
chr7 (23-175)||(25923806-25923958)
chr7 (23-175)||(45987785-45987937)
chr7 (6-148)||(6970723-6970865)
[»] chr4 (7 HSPs)
chr4 (5-298)||(29553870-29554163)
chr4 (9-293)||(19114157-19114441)
chr4 (9-61)||(40150311-40150363)
chr4 (23-148)||(19644726-19644851)
chr4 (23-119)||(8934837-8934933)
chr4 (211-296)||(23657319-23657404)
chr4 (220-296)||(8935025-8935101)
[»] chr5 (4 HSPs)
chr5 (9-298)||(3727503-3727793)
chr5 (5-293)||(22095385-22095673)
chr5 (23-140)||(5415433-5415550)
chr5 (9-148)||(11574973-11575112)
[»] chr3 (3 HSPs)
chr3 (5-258)||(54558597-54558850)
chr3 (5-288)||(51144782-51145065)
chr3 (10-293)||(20893889-20894172)
[»] chr1 (3 HSPs)
chr1 (5-218)||(43810527-43810740)
chr1 (5-148)||(24314737-24314880)
chr1 (23-175)||(25505246-25505398)
[»] chr2 (3 HSPs)
chr2 (9-254)||(22725608-22725853)
chr2 (8-152)||(38182473-38182617)
chr2 (8-293)||(5325479-5325764)
[»] chr6 (7 HSPs)
chr6 (8-256)||(5086195-5086443)
chr6 (23-175)||(19227249-19227401)
chr6 (23-175)||(33639653-33639805)
chr6 (23-148)||(503811-503936)
chr6 (9-66)||(15311324-15311381)
chr6 (9-66)||(15316618-15316675)
chr6 (23-175)||(8263981-8264133)
[»] scaffold0108 (1 HSPs)
scaffold0108 (23-175)||(10644-10796)
[»] chr8 (1 HSPs)
chr8 (23-85)||(4988408-4988470)


Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 2009255 - 2008958
Alignment:
Q  1 gtactagaattattaaacaacctattgttacattcagtccataaaactcaggcacaaagaaaccaagttagctcaagaaaagactttctagccttactac 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2009255 gtactagaattattaaacaacatattgttacattcagtccataaaactcaggcacaaagaaaccaagttagctgaagaaaagactttctagccttactac 2009156  T
Q  101 cacatgtagaatgaacaaactagacaaaatgatcaaacaagacattagagtctgctccgaaaaaacctatccaattgcggaccatgggccataaagaagc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2009155 cacatgtagaatgaacaaactagacaaaatgatcaaacaagacattagagtctgctccgaaaaaacctatccaattgcggaccatgggccataaagaagc 2009056  T
Q  201 aaaagtggagcaagataataacaagtgttgcgccgattctaaagtaccgcaaccagcaatgcacaaaccatcttatgaagaaatgacacctctataga 298  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  2009055 aaaagtggagcaagataataacaagtgttgcgctgattctaaagtaccgcagccaacaatgcacaaaccatcttatgaagaaatgacacctctataga 2008958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 5 - 296
Target Start/End: Complemental strand, 33796790 - 33796499
Alignment:
Q  5 tagaattattaaacaacctattgttacattcagtccataaaactcaggcacaaagaaaccaagttagctcaagaaaagactttctagccttactaccaca 104  Q
    |||||||||| |||||| |||| |||| ||||||| ||||||| ||| ||||||||| |||| | |||| |||||||||||||||||| ||||||||||     
T  33796790 tagaattattgaacaacttattattacgttcagtctataaaacccagacacaaagaagccaaatgagctgaagaaaagactttctagcattactaccacc 33796691  T
Q  105 tgtagaatgaacaaactagacaaaatgatcaaacaagacattagagtctgctccgaaaaaacctatccaattgcggaccatgggccataaagaagcaaaa 204  Q
    ||| | ||||||||||| ||||||  ||  | |||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||    
T  33796690 tgttgcatgaacaaactggacaaaccgactagacaagacattagagtctgctccaaaaaaaccaatccaatcgcggaccatgggccataaagaagcaaaa 33796591  T
Q  205 gtggagcaagataataacaagtgttgcgccgattctaaagtaccgcaaccagcaatgcacaaaccatcttatgaagaaatgacacctctata 296  Q
    || |||||||||| |||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  33796590 gtagagcaagatagtaacaagtgttgcgtcgattctaatgtaccacaaccagcaatgcacaaaccatcttatgaagaaatgacacctctata 33796499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 8 - 298
Target Start/End: Original strand, 7377450 - 7377736
Alignment:
Q  8 aattattaaacaacctattgttacattcagtccataaaactcaggcacaaagaaaccaagttagctcaagaaaagactttctagccttactaccacatgt 107  Q
    ||||||| |||||||||||||||| ||||||||||||||  || |||||||||| || | | || |  |||||||||||||||||||||||||||| |||    
T  7377450 aattattgaacaacctattgttacgttcagtccataaaatccaagcacaaagaagccgaatgagttgcagaaaagactttctagccttactaccacttgt 7377549  T
Q  108 agaatgaacaaactagacaaaatgatcaaacaagacattagagtctgctccgaaaaaacctatccaattgcggaccatgggccataaagaagcaaaagtg 207  Q
     ||||||||||||||||||||||||| | ||||||||||||| |||||||| |||||| | ||||||| |||||||   ||||||||||||||||||||     
T  7377550 tgaatgaacaaactagacaaaatgatgagacaagacattaga-tctgctccaaaaaaatcaatccaatcgcggacc---ggccataaagaagcaaaagta 7377645  T
Q  208 gagcaagataataacaagtgttgcgccgattctaaagtaccgcaaccagcaatgcacaaaccatcttatgaagaaatgacacctctataga 298  Q
    ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| ||||||||| |||||||||||||||||||||||    
T  7377646 gagcaagataataacaagtgttgcgccgattctaatgtaccacagccagcaatgcaccaaccatcttctgaagaaatgacacctctataga 7377736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 5 - 298
Target Start/End: Complemental strand, 27941917 - 27941624
Alignment:
Q  5 tagaattattaaacaacctattgttacattcagtccataaaactcaggcacaaagaaaccaagttagctcaagaaaagactttctagccttactaccaca 104  Q
    |||||||||| |||| |||||| |||| |||||||||||| || || |||||||||| |||| | |||| |||||||||||   |||||||||||| ||     
T  27941917 tagaattattgaacagcctattattacgttcagtccataatacccaagcacaaagaagccaaatgagctgaagaaaagactgcgtagccttactacaacc 27941818  T
Q  105 tgtagaatgaacaaactagacaaaatgatcaaacaagacattagagtctgctccgaaaaaacctatccaattgcggaccatgggccataaagaagcaaaa 204  Q
    ||| ||||||||||||||||||||||||||| |||| |||||||||||| ||||  ||||  | ||||||| ||  ||||| |||||||||||||||||     
T  27941817 tgttgaatgaacaaactagacaaaatgatcagacaaaacattagagtctactccagaaaagtcgatccaatcgcaaaccattggccataaagaagcaaag 27941718  T
Q  205 gtggagcaagataataacaagtgttgcgccgattctaaagtaccgcaaccagcaatgcacaaaccatcttatgaagaaatgacacctctataga 298  Q
     | || |||||||| ||||||||||||| ||||||| ||||||| |||||||||||||||||| |||||| | ||||||| |||||||||||||    
T  27941717 ttagaacaagataaaaacaagtgttgcgtcgattctgaagtaccacaaccagcaatgcacaaaacatcttctaaagaaataacacctctataga 27941624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 298
Target Start/End: Complemental strand, 34519009 - 34518734
Alignment:
Q  23 tattgttacattcagtccataaaactcaggcacaaagaaaccaagttagctcaagaaaagactttctagccttactaccacatgtagaatgaacaaacta 122  Q
    ||||||||| ||||||||||||||| ||||||||||||| |||| | ||||  ||||||||||    ||||||| | |||| ||| || ||||||||||     
T  34519009 tattgttacgttcagtccataaaacccaggcacaaagaagccaaataagctggagaaaagactgagaagccttattgccacctgttgagtgaacaaactg 34518910  T
Q  123 gacaaaatgatcaaacaagacattagagtctgctccgaaaaaacctatccaattgcggaccatgggccataaagaagcaaaagtggagcaagataataac 222  Q
     ||||| |||||| |||| ||||||| |||  |||| | |||||| |||||||  || ||||  | ||| |  |||||||||   || ||||| |  |||    
T  34518909 aacaaagtgatcagacaaaacattagtgtccactccaacaaaaccaatccaatcacgaaccaacgaccaaagtgaagcaaaatacgaacaagagagaaac 34518810  T
Q  223 aagtgttgcgccgattctaaagtaccgcaaccagcaatgcacaaaccatcttatgaagaaatgacacctctataga 298  Q
    || ||||| |||||||| || | ||||||||||| ||  ||||||||| ||| ||  | ||| |||||||||||||    
T  34518809 aaatgttgtgccgattccaaggcaccgcaaccagaaacacacaaaccagcttctgttggaattacacctctataga 34518734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 175
Target Start/End: Original strand, 17804681 - 17804833
Alignment:
Q  23 tattgttacattcagtccataaaactcaggcacaaagaaaccaagttagctcaagaaaagactttctagccttactaccacatgtagaatgaacaaacta 122  Q
    ||||||||| |||||||||||| || |||||||| |||| |||| | ||||  ||||||||||    ||||||||| |||| ||| || ||||||||||     
T  17804681 tattgttacgttcagtccataagacccaggcacagagaagccaaataagctggagaaaagactgagaagccttacttccacctgttgagtgaacaaactg 17804780  T
Q  123 gacaaaatgatcaaacaagacattagagtctgctccgaaaaaacctatccaat 175  Q
     |||||||||||| |||| ||||||| |||  |||| | |||||| |||||||    
T  17804781 aacaaaatgatcagacaaaacattagtgtccactccaacaaaaccaatccaat 17804833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 175
Target Start/End: Original strand, 25923806 - 25923958
Alignment:
Q  23 tattgttacattcagtccataaaactcaggcacaaagaaaccaagttagctcaagaaaagactttctagccttactaccacatgtagaatgaacaaacta 122  Q
    ||||||||| |||||||||||| || ||||||||||||| |||| | ||||  ||||||||||    | ||||||| |||| ||| || ||||||||||     
T  25923806 tattgttacgttcagtccataagacccaggcacaaagaagccaaataagctggagaaaagactgagaaaccttacttccacctgttgagtgaacaaactg 25923905  T
Q  123 gacaaaatgatcaaacaagacattagagtctgctccgaaaaaacctatccaat 175  Q
     |||||||||||| |||| ||||||| |||  |||| | |||||| |||||||    
T  25923906 aacaaaatgatcagacaaaacattagtgtccactccaacaaaaccaatccaat 25923958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 175
Target Start/End: Original strand, 45987785 - 45987937
Alignment:
Q  23 tattgttacattcagtccataaaactcaggcacaaagaaaccaagttagctcaagaaaagactttctagccttactaccacatgtagaatgaacaaacta 122  Q
    ||||||||| ||||||||||||||| ||||||||||||| |||| | ||||  ||||||||||    ||||||| | |||| ||| || ||||||||||     
T  45987785 tattgttacgttcagtccataaaacccaggcacaaagaagccaaataagctggagaaaagactcagaagccttattgccacttgttgagtgaacaaactg 45987884  T
Q  123 gacaaaatgatcaaacaagacattagagtctgctccgaaaaaacctatccaat 175  Q
     ||||| |||||| |||| ||||||| |||  |||| | |||||| |||||||    
T  45987885 aacaaagtgatcagacaaaacattagtgtccactccaacaaaaccaatccaat 45987937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 148
Target Start/End: Original strand, 6970723 - 6970865
Alignment:
Q  6 agaattattaaacaacctattgttacattcagtccataaaactcaggcacaaagaaaccaagttagctcaagaaaagactttctagccttactaccacat 105  Q
    ||||||||||||  || ||||||||| || ||||||||| || ||| ||||||| | |||| | || |  |||||||||||| |||||||||| |||| |    
T  6970723 agaattattaaaacacttattgttacgttgagtccataagacccagacacaaagtagccaaataagttggagaaaagactttgtagccttactcccacct 6970822  T
Q  106 gtagaatgaacaaactagacaaaatgatcaaacaagacattag 148  Q
    |  || ||||||||||  ||||| || ||| |||| |||||||    
T  6970823 gcggagtgaacaaactgaacaaagtggtcagacaaaacattag 6970865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 5 - 298
Target Start/End: Complemental strand, 29554163 - 29553870
Alignment:
Q  5 tagaattattaaacaacctattgttacattcagtccataaaactcaggcacaaagaaaccaagttagctcaagaaaagactttctagccttactaccaca 104  Q
    |||||||||| ||||||||||| |||| |||||||||||| || ||||||||||||| |||| | || | ||||||||||| |||||||||||||| ||     
T  29554163 tagaattattgaacaacctattattacgttcagtccataatacccaggcacaaagaagccaaatgagttgaagaaaagactgtctagccttactacaacc 29554064  T
Q  105 tgtagaatgaacaaactagacaaaatgatcaaacaagacattagagtctgctccgaaaaaacctatccaattgcggaccatgggccataaagaagcaaaa 204  Q
    ||| ||||||||||||| ||||||||||||| |||| |||||||||||| ||||  |||| || ||||||| ||| ||||| |||||||||||||||||     
T  29554063 tgttgaatgaacaaactggacaaaatgatcagacaaaacattagagtctactccagaaaagccaatccaatcgcgaaccattggccataaagaagcaaag 29553964  T
Q  205 gtggagcaagataataacaagtgttgcgccgattctaaagtaccgcaaccagcaatgcacaaaccatcttatgaagaaatgacacctctataga 298  Q
    || || |||||||| |||| |||||||| ||||||| ||||||| |||||||||||||||||| ||||||   ||||||| |||||||||||||    
T  29553963 gtagaacaagataaaaacaggtgttgcgtcgattctgaagtaccacaaccagcaatgcacaaaacatcttcaaaagaaataacacctctataga 29553870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 293
Target Start/End: Original strand, 19114157 - 19114441
Alignment:
Q  9 attattaaacaacctattgttacattcagtccataaaactcaggcacaaagaaaccaagttagctcaagaaaagactttctagccttactaccacatgta 108  Q
    |||||||||  |||||||||||  |||||||||||| || ||| ||||||| | | || |||| | ||||||||||||| | |||||||| |||| |||     
T  19114157 attattaaaacacctattgttatgttcagtccataagacccagacacaaagtagcaaaattagttgaagaaaagactttgtcgccttactcccacctgtt 19114256  T
Q  109 gaatgaacaaactagacaaaatgatcaaacaagacattagagtctgctccgaaaaaacctatccaattgcggaccatgggccataaagaagcaaaagtgg 208  Q
    |  ||||||||||  ||||| || ||| |||| |||||||  ||| |||| | |||||| |||||||  || ||||| ||||| |  ||||| || |  |    
T  19114257 gtgtgaacaaactgaacaaagtggtcagacaaaacattagtatctactccaacaaaaccaatccaatcacgaaccatcggccaaagtgaagcgaaggaag 19114356  T
Q  209 agcaagataataacaagtgttgcgccgattctaaagtaccgcaaccagcaatgcacaaaccatcttatgaagaaatgacacctct 293  Q
    |||| || |  ||||| ||||||||||| || |||| |||||||||||  |  ||||||||| | | ||  ||||||||||||||    
T  19114357 agcacgaaagaaacaaatgttgcgccgactccaaagcaccgcaaccagagacacacaaaccagcgtctggtgaaatgacacctct 19114441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 40150311 - 40150363
Alignment:
Q  9 attattaaacaacctattgttacattcagtccataaaactcaggcacaaagaa 61  Q
    ||||||||||||||||||||||| ||||||||||||||| | |||||||||||    
T  40150311 attattaaacaacctattgttacgttcagtccataaaacccgggcacaaagaa 40150363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 19644726 - 19644851
Alignment:
Q  23 tattgttacattcagtccataaaactcaggcacaaagaaaccaagttagctcaagaaaagactttctagccttactaccacatgtagaatgaacaaacta 122  Q
    ||||||||| ||||||||||||||| ||||||||||||| |||| | ||||  ||||||||||     |||||| | |||| ||| || ||||||||||     
T  19644726 tattgttacgttcagtccataaaacccaggcacaaagaagccaaataagctggagaaaagactgagaggccttatttccacctgttgagtgaacaaactg 19644825  T
Q  123 gacaaaatgatcaaacaagacattag 148  Q
     ||||| |||||| |||| |||||||    
T  19644826 aacaaagtgatcagacaaaacattag 19644851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 8934837 - 8934933
Alignment:
Q  23 tattgttacattcagtccataaaactcaggcacaaagaaaccaagttagctcaagaaaagactttctagccttactaccacatgtagaatgaacaaa 119  Q
    ||||||||| |||||||||||| || ||||||||||||| |||| | |||| || ||||||||   |||||||||| |||| ||| || ||||||||    
T  8934837 tattgttacgttcagtccataagacccaggcacaaagaagccaaataagctgaaaaaaagactgagtagccttacttccacctgttgagtgaacaaa 8934933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 296
Target Start/End: Original strand, 23657319 - 23657404
Alignment:
Q  211 caagataataacaagtgttgcgccgattctaaagtaccgcaaccagcaatgcacaaaccatcttatgaagaaatgacacctctata 296  Q
    ||||| || ||||| |||||||||||||| |||| |||||||||||  |  ||||||||| ||| ||| | ||| |||||||||||    
T  23657319 caagaaaaaaacaaatgttgcgccgattccaaagcaccgcaaccagagacacacaaaccagcttctgatggaattacacctctata 23657404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 8935025 - 8935101
Alignment:
Q  220 aacaagtgttgcgccgattctaaagtaccgcaaccagcaatgcacaaaccatcttatgaagaaatgacacctctata 296  Q
    ||||| |||||||||||||| |||| |||||||||||  |  ||||||||| ||| ||| | ||| |||||||||||    
T  8935025 aacaaatgttgcgccgattccaaagcaccgcaaccagagacacacaaaccagcttctgatggaattacacctctata 8935101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 131; Significance: 6e-68; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 9 - 298
Target Start/End: Complemental strand, 3727793 - 3727503
Alignment:
Q  9 attattaaacaacctattgttacattcagtccataaaactcaggcacaaagaaaccaagttagctcaagaaaagactttctagccttactaccacatgta 108  Q
    |||||| || ||||||||||||| |||||||||||| || |||||||||||||||||| | |||| ||||||||||||||||||||||||||||| ||||    
T  3727793 attattgaataacctattgttacgttcagtccataatacccaggcacaaagaaaccaaataagctgaagaaaagactttctagccttactaccacctgta 3727694  T
Q  109 gaatgaacaaactagacaaaa-tgatcaaacaagacattagagtctgctccgaaaaaacctatccaattgcggaccatgggccataaagaagcaaaagtg 207  Q
    |||||||||||||  |||||| |||||| | || | ||||| ||| ||||| || ||||| |||||||  || ||||||||||||||||||||| || |     
T  3727693 gaatgaacaaactgaacaaaactgatcagaaaaaatattagtgtcggctccaaagaaaccaatccaatcacgaaccatgggccataaagaagcacaatta 3727594  T
Q  208 gagcaagataataacaagtgttgcgccgattctaaagtaccgcaaccagcaatgcacaaaccatcttatgaagaaatgacacctctataga 298  Q
    |||||||||| |||||||||||||||||||||| |||| | |||||| |  |  ||||||||| ||| |||||| ||||||||||||||||    
T  3727593 gagcaagatagtaacaagtgttgcgccgattctgaagtcctgcaacctgacacacacaaaccagcttttgaagagatgacacctctataga 3727503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 5 - 293
Target Start/End: Complemental strand, 22095673 - 22095385
Alignment:
Q  5 tagaattattaaacaacctattgttacattcagtccataaaactcaggcacaaagaaaccaagttagctcaagaaaagactttctagccttactaccaca 104  Q
    |||||||||| ||  |||||||||||| ||||||||||||||| ||  ||||||||| |||| | ||||  |||||||||||| |||||||||| ||||     
T  22095673 tagaattattgaaacacctattgttacgttcagtccataaaacccaaacacaaagaagccaaataagctggagaaaagactttgtagccttactgccacc 22095574  T
Q  105 tgtagaatgaacaaactagacaaaatgatcaaacaagacattagagtctgctccgaaaaaacctatccaattgcggaccatgggccataaagaagcaaaa 204  Q
    ||| |||||||||||||  ||||| || ||| |||| ||||||| |||  |||| | |||||| ||| |||  || ||||| ||||| |  ||||||||     
T  22095573 tgttgaatgaacaaactgaacaaagtggtcagacaaaacattagtgtccactccaacaaaaccaatcgaatcacgaaccattggccaaagtgaagcaaac 22095474  T
Q  205 gtggagcaagataataacaagtgttgcgccgattctaaagtaccgcaaccagcaatgcacaaaccatcttatgaagaaatgacacctct 293  Q
    |  ||||| || |  ||||| |||||||||||||| |||| ||||||||||| ||| ||||||||| ||| ||  ||||||||||||||    
T  22095473 gaagagcacgaaagaaacaaatgttgcgccgattccaaagcaccgcaaccagaaatacacaaaccagcttctggtgaaatgacacctct 22095385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 23 - 140
Target Start/End: Complemental strand, 5415550 - 5415433
Alignment:
Q  23 tattgttacattcagtccataaaactcaggcacaaagaaaccaagttagctcaagaaaagactttctagccttactaccacatgtagaatgaacaaacta 122  Q
    ||||||||| |||||||||||| || ||||||||||||| |||| | |||| || ||||||||   |||||||||| |||| ||| || |||||| |||     
T  5415550 tattgttacgttcagtccataagacccaggcacaaagaagccaaataagctgaaaaaaagactgagtagccttacttccacctgttgagtgaacatactg 5415451  T
Q  123 gacaaaatgatcaaacaa 140  Q
     ||||| |||||||||||    
T  5415450 aacaaagtgatcaaacaa 5415433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 11575112 - 11574973
Alignment:
Q  9 attattaaacaacctattgttacattcagtccataaaactcaggcacaaagaaaccaagttagctcaagaaaagactttctagccttactaccacatgta 108  Q
    |||||||||  |||||||||||| |||||||||||| || ||| |||| || | |||| |||| | ||||||||||||| | |||||||| |||| |||     
T  11575112 attattaaaacacctattgttacgttcagtccataagacccagacacagagtagccaaattagttgaagaaaagactttgtcgccttactcccacctgtt 11575013  T
Q  109 gaatgaacaaactagacaaaatgatcaaacaagacattag 148  Q
       ||||||||||  ||||| || ||| |||| |||||||    
T  11575012 atgtgaacaaactgaacaaagtggtcagacaaaacattag 11574973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 5 - 258
Target Start/End: Complemental strand, 54558850 - 54558597
Alignment:
Q  5 tagaattattaaacaacctattgttacattcagtccataaaactcaggcacaaagaaaccaagttagctcaagaaaagactttctagccttactaccaca 104  Q
    ||||||| || |||||||| || |||| |||||||||||| || |||||||||||||  ||| | |||| ||||||||||| |||||||||||||| ||     
T  54558850 tagaattgttgaacaacctgttattacgttcagtccataacacccaggcacaaagaagtcaaatgagctgaagaaaagactgtctagccttactacgacc 54558751  T
Q  105 tgtagaatgaacaaactagacaaaatgatcaaacaagacattagagtctgctccgaaaaaacctatccaattgcggaccatgggccataaagaagcaaaa 204  Q
    ||| ||||||||||||| ||||||||||||| |||| |||||||||||| |||| ||||| || ||||||| ||| ||||| |||||||||||||||||     
T  54558750 tgttgaatgaacaaactggacaaaatgatcagacaatacattagagtctactccaaaaaagccaatccaatcgcgaaccattggccataaagaagcaaag 54558651  T
Q  205 gtggagcaagataataacaagtgttgcgccgattctaaagtaccgcaaccagca 258  Q
    || ||  ||||||| ||||||||||| | ||||||| ||| |||  ||||||||    
T  54558650 gtagaataagataaaaacaagtgttgtgtcgattctgaagcaccaaaaccagca 54558597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 288
Target Start/End: Original strand, 51144782 - 51145065
Alignment:
Q  5 tagaattattaaacaacctattgttacattcagtccataaaactcaggcacaaagaaaccaagttagctcaagaaaagactttctagccttactaccaca 104  Q
    |||||||||| ||  |||||||||||| ||||||||||||||||||  ||||||| | |||| | ||||  | |||||||||| ||| |||||| ||||     
T  51144782 tagaattattgaaacacctattgttacgttcagtccataaaactcaaacacaaagtagccaaataagctggaaaaaagactttgtagtcttactgccacc 51144881  T
Q  105 tgtagaatgaacaaactagacaaaatgatcaaacaagacattagagtctgctccgaaaaaacctatccaattgcggaccatgggccataaagaagcaaaa 204  Q
    ||| |||||||||||||  ||||| || ||| |||| ||||||| |||  |||| | |||||| |||||||  || |||||  |||| |   |||||||     
T  51144882 tgttgaatgaacaaactgaacaaagtggtcagacaaaacattagtgtccactccaacaaaaccaatccaatcacgaaccattagccaaagtaaagcaaag 51144981  T
Q  205 gtggagcaagataataacaagtgttgcgccgattctaaagtaccgcaaccagcaatgcacaaaccatcttatgaagaaatgaca 288  Q
    |  ||||| || |  ||||| |||||||||||||| |||| ||||||| |||  || ||||||||| ||| ||  |||||||||    
T  51144982 gaagagcacgaaagaaacaaatgttgcgccgattccaaagcaccgcaatcagagatacacaaaccagcttctggtgaaatgaca 51145065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 293
Target Start/End: Complemental strand, 20894172 - 20893889
Alignment:
Q  10 ttattaaacaacctattgttacattcagtccataaaactcaggcacaaagaaaccaagttagctcaagaaaagactttctagccttactaccacatgtag 109  Q
    ||||||||  || ||||||||| |||||||||||| || ||  ||||||| | |||| |||| |  | |||||||||| |||||||||| |||| ||| |    
T  20894172 ttattaaaacacttattgttacgttcagtccataagacccaaacacaaagtagccaaattagttggaaaaaagactttgtagccttactcccacctgttg 20894073  T
Q  110 aatgaacaaactagacaaaatgatcaaacaagacattagagtctgctccgaaaaaacctatccaattgcggaccatgggccataaagaagcaaaagtgga 209  Q
      ||||||||||  ||||| || ||| |||| |||||||  ||  |||| | |||||| |||||||  || ||||| ||||| |  ||||| || |  ||    
T  20894072 tgtgaacaaactgaacaaagtggtcagacaaaacattagtatccactccaacaaaaccaatccaatcacgaaccatcggccaaagtgaagcgaaggaaga 20893973  T
Q  210 gcaagataataacaagtgttgcgccgattctaaagtaccgcaaccagcaatgcacaaaccatcttatgaagaaatgacacctct 293  Q
    ||| || |  ||||| |||||| |||| || |||| |||||||||||  |  ||||||||| ||| ||  ||||||||||||||    
T  20893972 gcatgaaagaaacaaatgttgcaccgactccaaagcaccgcaaccagagacacacaaaccagcttctggtgaaatgacacctct 20893889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 7e-46; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 5 - 218
Target Start/End: Original strand, 43810527 - 43810740
Alignment:
Q  5 tagaattattaaacaacctattgttacattcagtccataaaactcaggcacaaagaaaccaagttagctcaagaaaagactttctagccttactaccaca 104  Q
    |||||||||| ||||||||||| |||| |||||||||||| || ||||||||||||| |||| | |||  ||||||| | | |||||||||||||| ||     
T  43810527 tagaattattgaacaacctattattacgttcagtccataacacccaggcacaaagaagccaaatgagccgaagaaaatattgtctagccttactacgacc 43810626  T
Q  105 tgtagaatgaacaaactagacaaaatgatcaaacaagacattagagtctgctccgaaaaaacctatccaattgcggaccatgggccataaagaagcaaaa 204  Q
    ||| ||||||||||||| ||||||||||||| |||| |||||||||||| |||| ||||| || ||||||| ||  ||||| |||||||||||||||||     
T  43810627 tgttgaatgaacaaactggacaaaatgatcagacaatacattagagtctactccaaaaaagccaatccaatcgcaaaccattggccataaagaagcaaag 43810726  T
Q  205 gtggagcaagataa 218  Q
    || || ||||||||    
T  43810727 gtagaacaagataa 43810740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 5 - 148
Target Start/End: Original strand, 24314737 - 24314880
Alignment:
Q  5 tagaattattaaacaacctattgttacattcagtccataaaactcaggcacaaagaaaccaagttagctcaagaaaagactttctagccttactaccaca 104  Q
    |||||| ||| || ||| ||||||||| |||||||||||| |||||||||||||||| |||| | ||||  | |||||||| | |||||||||| ||||     
T  24314737 tagaatcattgaaaaacatattgttacgttcagtccataagactcaggcacaaagaagccaaataagctggaaaaaagactatgtagccttacttccact 24314836  T
Q  105 tgtagaatgaacaaactagacaaaatgatcaaacaagacattag 148  Q
    ||| || ||||||||||  ||||| |||||| |||| |||||||    
T  24314837 tgttgagtgaacaaactgaacaaagtgatcagacaaaacattag 24314880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 175
Target Start/End: Complemental strand, 25505398 - 25505246
Alignment:
Q  23 tattgttacattcagtccataaaactcaggcacaaagaaaccaagttagctcaagaaaagactttctagccttactaccacatgtagaatgaacaaacta 122  Q
    ||||||||  |||||| ||||| || ||||||||||||| |||| | ||||  ||||||||||    ||||||||| |||| ||| || ||||||||||     
T  25505398 tattgttatgttcagttcataagacccaggcacaaagaagccaaataagctggagaaaagactgagaagccttacttccacctgttgagtgaacaaactg 25505299  T
Q  123 gacaaaatgatcaaacaagacattagagtctgctccgaaaaaacctatccaat 175  Q
     ||||| |||||| |||| ||||||| |||  |||| | |||||| |||||||    
T  25505298 aacaaagtgatcagacaaaacattagtgtccactccaacaaaaccaatccaat 25505246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 9 - 254
Target Start/End: Complemental strand, 22725853 - 22725608
Alignment:
Q  9 attattaaacaacctattgttacattcagtccataaaactcaggcacaaagaaaccaagttagctcaagaaaagactttctagccttactaccacatgta 108  Q
    ||||||||| |||||||||||||||||||||||||| || || |||||| ||| |||| ||||   |||||| ||||||| |||||||||| ||| |||     
T  22725853 attattaaataacctattgttacattcagtccataagacccaagcacaaggaagccaaattagtcgaagaaacgactttcgagccttactaacacctgtt 22725754  T
Q  109 gaatgaacaaactagacaaaatgatcaaacaagacattagagtctgctccgaaaaaacctatccaattgcggaccatgggccataaagaagcaaaagtgg 208  Q
    |||||||||||||  |||||||| ||||| |||||||| || ||  | || | |||||| |||||||  |  |||| ||||||||||||||||||||| |    
T  22725753 gaatgaacaaactgaacaaaatggtcaaataagacattggaatccacccccataaaaccaatccaatcacaaaccaagggccataaagaagcaaaagtag 22725654  T
Q  209 agcaagataataacaagtgttgcgccgattctaaagtaccgcaacc 254  Q
    || || |||| |  || |||||||||||||||| || |||||||||    
T  22725653 agtaaaataacattaaatgttgcgccgattctatagaaccgcaacc 22725608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 38182473 - 38182617
Alignment:
Q  8 aattattaaacaacctattgttacattcagtccataaaactcaggcacaaagaaaccaagttagctcaagaaaagactttctagccttactaccacatgt 107  Q
    |||||||||||||  ||||||||||  ||||||||||||| ||| |||||||||  ||| | |||| ||| |||||| | ||| | |||| ||||| | |    
T  38182473 aattattaaacaatttattgttacacccagtccataaaacccagacacaaagaaggcaaatgagctgaaggaaagacctcctaactttaccaccacctct 38182572  T
Q  108 agaatgaacaaactagacaaaatgatcaaacaagacattagagtc 152  Q
     |||||||||||||  | || ||||||| |||||||||| |||||    
T  38182573 tgaatgaacaaactctaaaagatgatcagacaagacattggagtc 38182617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 293
Target Start/End: Original strand, 5325479 - 5325764
Alignment:
Q  8 aattattaaacaacctattgttacattcagtccataaaactcaggcacaaagaaaccaagttagctcaagaaaagactttctagccttactaccacatgt 107  Q
    ||||||||||  |||||||||||| |||| ||||||| |  ||| |||| || | |||| |||| |  | |||||||||| |||||||||| |||| |||    
T  5325479 aattattaaaacacctattgttacgttcaatccataagatccagacacagagtagccaaattagttggaaaaaagactttgtagccttactcccacctgt 5325578  T
Q  108 agaatgaacaaactagacaaaatgatcaaacaagacattagagtctgctccgaaaaaacctatccaattgcggaccatgggccataaagaagcaaaagtg 207  Q
     |  ||||||||||  ||||| || ||| |||| |||||||  ||  |||| | |||||| |||||||  || ||||| ||||| |  ||||| || |      
T  5325579 tgtgtgaacaaactgaacaaagtggtcagacaaaacattagtatccactccaacaaaaccaatccaatcacgaaccatcggccaaagtgaagcgaaggaa 5325678  T
Q  208 gagcaagataataacaagtgttgcgccgattctaaagtaccgcaaccagcaatgcacaaaccatcttatgaagaaatgacacctct 293  Q
    ||||| || |  ||||| ||||||||||| || |||| |||||||||||  |  ||||||||| ||| ||  ||||||||||||||    
T  5325679 gagcacgaaagaaacaaatgttgcgccgactccaaagcaccgcaaccagagacacacaaaccagcttctggtgaaatgacacctct 5325764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 256
Target Start/End: Complemental strand, 5086443 - 5086195
Alignment:
Q  8 aattattaaacaacctattgttacattcagtccataaaactcaggcacaaagaaaccaagttagctcaagaaaagactttctagccttactaccacatgt 107  Q
    ||||||||||  || ||||||||| ||||||||||||||| ||| |||| || | |||| | ||||  | |||||||||| |||||||||| |||| |||    
T  5086443 aattattaaaacacttattgttacgttcagtccataaaacccagacacagagtagccaaataagctggaaaaaagactttgtagccttactgccacctgt 5086344  T
Q  108 agaatgaacaaactagacaaaatgatcaaacaagacattagagtctgctccgaaaaaacctatccaattgcggaccatgggccataaagaagcaaaagtg 207  Q
     || ||||||||||| ||||| || ||| |||| ||||||| |||  |||| | |||||| |||||||  |  ||||| ||||| |  |||||||| |      
T  5086343 tgagtgaacaaactaaacaaagtggtcagacaaaacattagtgtccactccaacaaaaccaatccaatcacaaaccattggccaaagtgaagcaaaggaa 5086244  T
Q  208 gagcaagataataacaagtgttgcgccgattctaaagtaccgcaaccag 256  Q
    ||||| || |  ||||| |||||||| ||||| |||| |||||||||||    
T  5086243 gagcatgaaagaaacaaatgttgcgcagattccaaagcaccgcaaccag 5086195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 175
Target Start/End: Original strand, 19227249 - 19227401
Alignment:
Q  23 tattgttacattcagtccataaaactcaggcacaaagaaaccaagttagctcaagaaaagactttctagccttactaccacatgtagaatgaacaaacta 122  Q
    ||||||||| ||||||||||||||| || |||||||||| |||| | ||||  ||||||||||    ||||||| | |||| ||| || ||||||||||     
T  19227249 tattgttacgttcagtccataaaacccaagcacaaagaagccaaataagctggagaaaagactgagaagccttattgccacctgttgagtgaacaaactg 19227348  T
Q  123 gacaaaatgatcaaacaagacattagagtctgctccgaaaaaacctatccaat 175  Q
     ||||| |||||| |||| ||||||| |||  |||| | |||||| |||||||    
T  19227349 aacaaagtgatcagacaaaacattagtgtccactccaacaaaaccaatccaat 19227401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 175
Target Start/End: Original strand, 33639653 - 33639805
Alignment:
Q  23 tattgttacattcagtccataaaactcaggcacaaagaaaccaagttagctcaagaaaagactttctagccttactaccacatgtagaatgaacaaacta 122  Q
    ||||||||| |||||||||||| || ||||||||||||| |||| | ||||  ||||||||||    ||||||| | |||| ||| || ||||||||||     
T  33639653 tattgttacgttcagtccataatacccaggcacaaagaagccaaataagctggagaaaagactgagaagccttattgccacctgttgagtgaacaaactg 33639752  T
Q  123 gacaaaatgatcaaacaagacattagagtctgctccgaaaaaacctatccaat 175  Q
     ||||| |||||| |||| ||||||| |||  |||| | |||||| |||||||    
T  33639753 aacaaagtgatcagacaaaacattagtgtccactccaacaaaaccaatccaat 33639805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 503936 - 503811
Alignment:
Q  23 tattgttacattcagtccataaaactcaggcacaaagaaaccaagttagctcaagaaaagactttctagccttactaccacatgtagaatgaacaaacta 122  Q
    |||| |||| |||||||||||| || |||||||| |||| ||||   ||||  ||||||||||    ||||||||| |||| ||| || ||||||||||     
T  503936 tattattacgttcagtccataagacccaggcacagagaagccaaacaagctggagaaaagactgagaagccttacttccacctgttgagtgaacaaactg 503837  T
Q  123 gacaaaatgatcaaacaagacattag 148  Q
     ||||| |||||| |||| |||||||    
T  503836 aacaaagtgatcagacaaaacattag 503811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 15311324 - 15311381
Alignment:
Q  9 attattaaacaacctattgttacattcagtccataaaactcaggcacaaagaaaccaa 66  Q
    ||||||||||| |||||| ||||| ||| ||||||||||||| ||||| |||| ||||    
T  15311324 attattaaacagcctattattacactcattccataaaactcaagcacagagaagccaa 15311381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 15316618 - 15316675
Alignment:
Q  9 attattaaacaacctattgttacattcagtccataaaactcaggcacaaagaaaccaa 66  Q
    ||||||||||| |||||| ||||| ||| ||||||||||||| ||||| |||| ||||    
T  15316618 attattaaacagcctattattacactcattccataaaactcaagcacagagaagccaa 15316675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 175
Target Start/End: Original strand, 8263981 - 8264133
Alignment:
Q  23 tattgttacattcagtccataaaactcaggcacaaagaaaccaagttagctcaagaaaagactttctagccttactaccacatgtagaatgaacaaacta 122  Q
    ||||||||| |||||||||||| |  |||||| | |||| |||| | || |  ||||||||||    ||||||||| |||| | | || ||||||||||     
T  8263981 tattgttacgttcagtccataagatccaggcatagagaagccaaataagttggagaaaagactgagaagccttacttccacctattgagtgaacaaactg 8264080  T
Q  123 gacaaaatgatcaaacaagacattagagtctgctccgaaaaaacctatccaat 175  Q
     |||||||||||| |||| ||||||| |||  |||| | |||||| |||||||    
T  8264081 aacaaaatgatcagacaaaacattagtgtccactccaacaaaaccaatccaat 8264133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 23 - 175
Target Start/End: Original strand, 10644 - 10796
Alignment:
Q  23 tattgttacattcagtccataaaactcaggcacaaagaaaccaagttagctcaagaaaagactttctagccttactaccacatgtagaatgaacaaacta 122  Q
    ||||||||| ||||||||||||||| ||||||||||||| |||| | ||||  ||||||||||    ||||||||| |||| ||| || ||||||||||     
T  10644 tattgttacgttcagtccataaaacccaggcacaaagaagccaaataagctggagaaaagactgagaagccttacttccacctgttgagtgaacaaactg 10743  T
Q  123 gacaaaatgatcaaacaagacattagagtctgctccgaaaaaacctatccaat 175  Q
     ||||| |||||| |||| ||||||| |||  |||| | |||||| |||||||    
T  10744 aacaaagtgatcagacaaaacattagtgtccactccaacaaaaccaatccaat 10796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 4988470 - 4988408
Alignment:
Q  23 tattgttacattcagtccataaaactcaggcacaaagaaaccaagttagctcaagaaaagact 85  Q
    ||||||||| ||||||||||||||| ||||||||| ||| |||| | ||||  ||||||||||    
T  4988470 tattgttacgttcagtccataaaacccaggcacaacgaagccaaataagctagagaaaagact 4988408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University