View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20314_high_34 (Length: 231)

Name: NF20314_high_34
Description: NF20314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20314_high_34
NF20314_high_34
[»] chr8 (1 HSPs)
chr8 (24-211)||(1424731-1424919)
[»] chr3 (4 HSPs)
chr3 (43-213)||(50057915-50058096)
chr3 (43-120)||(28095338-28095414)
chr3 (146-209)||(28095451-28095515)
chr3 (146-185)||(46146808-46146847)
[»] chr2 (2 HSPs)
chr2 (79-192)||(25475651-25475775)
chr2 (150-211)||(41894265-41894327)
[»] chr7 (2 HSPs)
chr7 (73-140)||(39363782-39363849)
chr7 (43-132)||(29442848-29442936)
[»] chr1 (1 HSPs)
chr1 (146-211)||(2411900-2411966)


Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 24 - 211
Target Start/End: Complemental strand, 1424919 - 1424731
Alignment:
Q  24 gaagagatatagggagtgcaaattaggctagtggacattttggaaattttgaaggacattttgtaggattatagttgggtttatttggacatttccttaa 123  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1424919 gaagagatatacggagtgcaaattaggctagtggacattttggaaattttgaaggacattttgtaggattatagttgggtttatttggacatttccttaa 1424820  T
Q  124 cttgctacagttataagtgatagataatttcttgttgctaggacaaggtgaataagtggagaagtgtgtaggtaa-ggtgtcatgtggt 211  Q
    | |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||| |||| |||||||||||||    
T  1424819 cctgctacagttataagtgatagatattttcttgttgctaagacaaggtgaataagtggagaagtatgtaagtaagggtgtcatgtggt 1424731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 43 - 213
Target Start/End: Complemental strand, 50058096 - 50057915
Alignment:
Q  43 aaattaggctagtggacattttggaaattttgaaggacattttgtaggattatagttgggtttatttggacatttccttaacttgctacagttataagtg 142  Q
    |||||||||||||||||| ||||| ||| | |||||||||||| |||||||||||||||| |||||||||||||||||  ||  ||||| |||| ||| |    
T  50058096 aaattaggctagtggacaatttgggaatat-gaaggacattttctaggattatagttgggcttatttggacatttcctcgacccgctacggttagaaggg 50057998  T
Q  143 -----------atagataatttcttgttgctaggacaaggtgaataagtggagaagtgtgtaggta-aggtgtcatgtggtta 213  Q
               || |||| ||||||||||||||||||||||||||||||||| ||||||||  |||  |||||||||||||||    
T  50057997 aactatctgctatggatattttcttgttgctaggacaaggtgaataagtggaaaagtgtgtgtgtaggggtgtcatgtggtta 50057915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 120
Target Start/End: Original strand, 28095338 - 28095414
Alignment:
Q  43 aaattaggctagtggacattttggaaattttgaaggacattttgtaggattatagttgggtttatttggacatttcct 120  Q
    ||||||||||||||| || ||||| ||| | |||||| |||||||||||||||||||||| |||| ||||||||||||    
T  28095338 aaattaggctagtgggcaatttgggaatat-gaaggatattttgtaggattatagttgggcttatctggacatttcct 28095414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 209
Target Start/End: Original strand, 28095451 - 28095515
Alignment:
Q  146 gataatttcttgttgctaggacaaggtgaataagtggagaagtgtgtaggtaa-ggtgtcatgtg 209  Q
    |||| |||||||||||||||| |||||||||||||| | |||||||| ||||| |||||||||||    
T  28095451 gatattttcttgttgctaggataaggtgaataagtgtaaaagtgtgtgggtaagggtgtcatgtg 28095515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 46146808 - 46146847
Alignment:
Q  146 gataatttcttgttgctaggacaaggtgaataagtggaga 185  Q
    |||| ||||||||||||||||||||||| |||||||||||    
T  46146808 gatattttcttgttgctaggacaaggtgtataagtggaga 46146847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 79 - 192
Target Start/End: Original strand, 25475651 - 25475775
Alignment:
Q  79 acattttgtaggattatagttgggtttatttggacatttccttaacttgctacagttataagtg-----------atagataatttcttgttgctaggac 167  Q
    ||||||||||||||||||||||   ||||||||||||||||||||| ||||||| ||||||| |           ||  ||| ||||||||||||||||     
T  25475651 acattttgtaggattatagttgatcttatttggacatttccttaacctgctacaattataagggaaccatatgctatgtatattttcttgttgctaggat 25475750  T
Q  168 aaggtgaataagtggagaagtgtgt 192  Q
    |||||||||||||||||||||||||    
T  25475751 aaggtgaataagtggagaagtgtgt 25475775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 41894327 - 41894265
Alignment:
Q  150 atttcttgttgctaggacaaggtgaataagtggagaagtgtgtaggt-aaggtgtcatgtggt 211  Q
    |||| ||||||||||||||||||||||| || || |||||||||||| |||||||||||||||    
T  41894327 attttttgttgctaggacaaggtgaataggtagaaaagtgtgtaggtaaaggtgtcatgtggt 41894265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 39363782 - 39363849
Alignment:
Q  73 tgaaggacattttgtaggattatagttgggtttatttggacatttccttaacttgctacagttataag 140  Q
    |||| ||| |||||||||||||||| |||| |||||||||||||||||| || |||||||||||||||    
T  39363782 tgaaagacgttttgtaggattatagatgggcttatttggacatttcctttacctgctacagttataag 39363849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 29442848 - 29442936
Alignment:
Q  43 aaattaggctagtggacattttggaaattttgaaggacattttgtaggattatagttgggtttatttggacatttccttaacttgctaca 132  Q
    ||||||||||||| |||||||||  ||| |  ||||||||||||||||| |||||||| ||||||||||| ||||||||||  |||||||    
T  29442848 aaattaggctagttgacattttgcgaatata-aaggacattttgtaggactatagttgtgtttatttggaaatttccttaatctgctaca 29442936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 211
Target Start/End: Complemental strand, 2411966 - 2411900
Alignment:
Q  146 gataatttcttgttgctaggacaaggtgaataagtggagaagtgtgtaggt-aaggtgtcatgtggt 211  Q
    |||| ||| ||||| ||||||||||||||||| || || |||||||||||| |||||||||||||||    
T  2411966 gatatttttttgttactaggacaaggtgaataggtagaaaagtgtgtaggtaaaggtgtcatgtggt 2411900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University