View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20314_high_38 (Length: 204)

Name: NF20314_high_38
Description: NF20314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20314_high_38
NF20314_high_38
[»] chr1 (9 HSPs)
chr1 (15-198)||(33042565-33042748)
chr1 (15-149)||(16252045-16252179)
chr1 (51-128)||(30710483-30710560)
chr1 (51-129)||(30689713-30689791)
chr1 (51-129)||(30718756-30718834)
chr1 (51-128)||(30656658-30656735)
chr1 (57-128)||(30698600-30698671)
chr1 (51-128)||(30671819-30671896)
chr1 (81-115)||(30623888-30623922)
[»] chr7 (1 HSPs)
chr7 (81-118)||(38862497-38862534)


Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-100; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 33042565 - 33042748
Alignment:
Q  15 gcagcagagataagagattcgacgaggaatggaatgagggtgtggctaggaacctttgatagtgcagaagctgctgctttggcttatgatcaagcagctt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33042565 gcagcagagataagagattcgacgaggaatggaatgagggtgtggctaggaacctttgatagtgcagaagctgctgctttggcttatgatcaagcagctt 33042664  T
Q  115 tttccatgagaggttcttctgcaatactcaattttcctgttgagattgttagagaatcgcttagtgatatgaattgtgatgatg 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33042665 tttccatgagaggttcttctgcaatactcaattttcctgttgagattgttagagaatcgcttagtgatatgaattgtgatgatg 33042748  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 16252179 - 16252045
Alignment:
Q  15 gcagcagagataagagattcgacgaggaatggaatgagggtgtggctaggaacctttgatagtgcagaagctgctgctttggcttatgatcaagcagctt 114  Q
    |||||||| ||||| ||||| || ||  |||| || ||||| ||| ||||||| ||||||||||| ||||| || ||  | |||||||||||||| ||||    
T  16252179 gcagcagaaataagggattcaactagacatggcataagggtatggttaggaacatttgatagtgctgaagcagcagcactagcttatgatcaagctgctt 16252080  T
Q  115 tttccatgagaggttcttctgcaatactcaatttt 149  Q
    |||| ||||||||||| ||||||| ||| ||||||    
T  16252079 tttcaatgagaggttcatctgcaacacttaatttt 16252045  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 30710560 - 30710483
Alignment:
Q  51 agggtgtggctaggaacctttgatagtgcagaagctgctgctttggcttatgatcaagcagctttttccatgagaggt 128  Q
    ||||| ||||||||||| ||||||||||| |||| ||||||||| |||||||||||||| || ||||| |||||||||    
T  30710560 agggtttggctaggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagaggt 30710483  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 129
Target Start/End: Complemental strand, 30689791 - 30689713
Alignment:
Q  51 agggtgtggctaggaacctttgatagtgcagaagctgctgctttggcttatgatcaagcagctttttccatgagaggtt 129  Q
    ||||| ||||| ||||| ||||||||||| |||| ||||||||| |||||||||||||| || ||||| ||||||||||    
T  30689791 agggtttggcttggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagaggtt 30689713  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 129
Target Start/End: Complemental strand, 30718834 - 30718756
Alignment:
Q  51 agggtgtggctaggaacctttgatagtgcagaagctgctgctttggcttatgatcaagcagctttttccatgagaggtt 129  Q
    ||||| ||||| ||||| ||||||||||| |||| ||||||||| |||||||||||||| || ||||| ||||||||||    
T  30718834 agggtttggcttggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagaggtt 30718756  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 30656735 - 30656658
Alignment:
Q  51 agggtgtggctaggaacctttgatagtgcagaagctgctgctttggcttatgatcaagcagctttttccatgagaggt 128  Q
    ||||| ||| ||||||| ||||||||||| |||| ||||||||| |||||||||||||| || ||||| |||||||||    
T  30656735 agggtttggttaggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagaggt 30656658  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 30698671 - 30698600
Alignment:
Q  57 tggctaggaacctttgatagtgcagaagctgctgctttggcttatgatcaagcagctttttccatgagaggt 128  Q
    ||||||||||| ||||||||||| |||| ||||||||| |||||||||||||| || || || |||||||||    
T  30698671 tggctaggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattctcaatgagaggt 30698600  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 30671896 - 30671819
Alignment:
Q  51 agggtgtggctaggaacctttgatagtgcagaagctgctgctttggcttatgatcaagcagctttttccatgagaggt 128  Q
    ||||| ||||| ||||| ||||| ||||| |||| ||||||||| |||||||||||||| || ||||| |||||||||    
T  30671896 agggtttggcttggaacatttgacagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagaggt 30671819  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 115
Target Start/End: Complemental strand, 30623922 - 30623888
Alignment:
Q  81 gaagctgctgctttggcttatgatcaagcagcttt 115  Q
    |||||||||||||| ||||||||||||||||||||    
T  30623922 gaagctgctgctttagcttatgatcaagcagcttt 30623888  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 38862497 - 38862534
Alignment:
Q  81 gaagctgctgctttggcttatgatcaagcagctttttc 118  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  38862497 gaagcagctgctttagcttatgatcaagcagctttttc 38862534  T

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