View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20314_high_7 (Length: 467)
Name: NF20314_high_7
Description: NF20314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20314_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 16 - 461
Target Start/End: Original strand, 5938058 - 5938503
Alignment:
| Q |
16 |
agtaagatcttagctttgtaaactcaaataacagatctttttagatcatcttcaatgataaatttgtaagaaacacaaaattggttttctatcaataagg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5938058 |
agtaagatcttagctttgtaaactcaaataacagatctttttagatcatcttcaatgataaatttgtaagaaacacaaaattggttttctatcaattagg |
5938157 |
T |
|
| Q |
116 |
tttcaatttacaaacatgaacatgaagtaaatctgctacactccattacttgccgtcattgacagcccactagtttccatcagcttatctattatctttt |
215 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5938158 |
tttcaatttacaaacatgaacatgaactaaatctgctacactccattacttgccgtcattgacagcccactagtttccatcagcttatctattatctttt |
5938257 |
T |
|
| Q |
216 |
gtaaagctggagcactcacgacacaatccttatctgcaaaacacgatctaccttcttcagctgccttgcaaagctgtggatctagaggaaccttgccgag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
5938258 |
gtaaagctggagcactcacgacacaatccttatctgcaaaacacgatctaccttcttcagctgccttgcaaagctgtggatctaaaggaaccttaccgag |
5938357 |
T |
|
| Q |
316 |
aaagggtaccgccatctcgttacacatcttcaacgctccaccacggctactatcaaatacttcactgcaggcgatcaaattcagcatttcaggcgctttt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5938358 |
aaagggtaccgccatctcgttacacatcttcaacgctccaccacggctactatcaaatacttcactgcaggcgatcaaattcagcatttcaggcgctttt |
5938457 |
T |
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| Q |
416 |
tctttcatgtattctgatatccactccgtaacatctttcatctcac |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5938458 |
tctttcatgtattctgatatccactccgtaacatctttcatctcac |
5938503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 100 - 461
Target Start/End: Complemental strand, 4219300 - 4218940
Alignment:
| Q |
100 |
ttttctatcaataaggtttcaatttacaaacatgaacatgaagtaaatctgctacactccattacttgccgtcattgacagcccactagtttccatcagc |
199 |
Q |
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|||||| ||||| ||||||||||||||||| | |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4219300 |
ttttctgtcaattaggtttcaatttacaaagacgaacat-aagtaaatctgctacactccattactttccgtcattgacagcccactagtttccatcagc |
4219202 |
T |
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| Q |
200 |
ttatctattatcttttgtaaagctggagcactcacgacacaatccttatctgcaaaacacgatctaccttcttcagctgccttgcaaagctgtggatcta |
299 |
Q |
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|||||||| ||||||||||| |||||||| ||||| |||||||| ||||||||||| || ||||| |||||||| ||||||||||||||||||||||||| |
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| T |
4219201 |
ttatctataatcttttgtaacgctggagcgctcacaacacaatctttatctgcaaagcaggatctgccttcttcggctgccttgcaaagctgtggatcta |
4219102 |
T |
|
| Q |
300 |
gaggaaccttgccgagaaagggtaccgccatctcgttacacatcttcaacgctccaccacggctactatcaaatacttcactgcaggcgatcaaattcag |
399 |
Q |
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||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
4219101 |
aaggaaccttaccaagaaagggtaccgccatctcgttacacatcttcaacgctccaccaccgctactatcaaatacttcactgcaggcgattaaattcag |
4219002 |
T |
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| Q |
400 |
catttcaggcgctttttctttcatgtattctgatatccactccgtaacatctttcatctcac |
461 |
Q |
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|||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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|
| T |
4219001 |
catttcgggcgctttttctttcatgtactccgatatccactccgtaacatctttcatctcac |
4218940 |
T |
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