View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20314_high_8 (Length: 460)
Name: NF20314_high_8
Description: NF20314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20314_high_8 |
 | |
|
| [»] scaffold1749 (1 HSPs) |
| | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 3 - 442
Target Start/End: Complemental strand, 31020890 - 31020451
Alignment:
| Q |
3 |
cttgaggagcagcacagataatttcataggaactcagtattcatagtcaatttagcatattcagatggctagcagcagcaactcctcttcttcatctctt |
102 |
Q |
| |
|
|||||| |||| ||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31020890 |
cttgagaagcaccactgataatttcataggaactcagtattcataatcaacttagcatattcagatggctagcagcagcaactcctcttcttcagctctt |
31020791 |
T |
|
| Q |
103 |
atggcattgccaaggaggaagaattattataatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31020790 |
atggcattgccaaggaggaagaattattatgatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttc |
31020691 |
T |
|
| Q |
203 |
aaagaaaaggcatttttgcatttagagacgacgctaatcttcaaaaaggtgaatccataccacccaagctcattcgtgcaattgaagggtctcaggtttt |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31020690 |
aaagaaaaggcatttttgcatttagagacgacgctaatcttcaaaaaggtgaatccataccacccgagctcattcgtgcaattgaagggtctcaggtttt |
31020591 |
T |
|
| Q |
303 |
cattgcggtcctctccaaaaactatgcttcctcaacttggtgcttgcgagaattggtacacatccttcactgcagtcaagtttctggaagacgtgttctt |
402 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31020590 |
cattgcggtcctctccaaaaactattcttcctcaacttggtgcttgcgagaattggtacacatccttgactgcagtcaagtttctggaagacgtgttctt |
31020491 |
T |
|
| Q |
403 |
cctgttttttatgatgttgatccttttgaggtgagacatc |
442 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31020490 |
cctgttttttatgatgttgatccttctgaggtgagacatc |
31020451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 3 - 442
Target Start/End: Complemental strand, 31030771 - 31030332
Alignment:
| Q |
3 |
cttgaggagcagcacagataatttcataggaactcagtattcatagtcaatttagcatattcagatggctagcagcagcaactcctcttcttcatctctt |
102 |
Q |
| |
|
|||||| |||| ||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31030771 |
cttgagaagcaccactgataatttcataggaactcagcattcataatcaatttagcatattcagatggctagcagcagcaactcctcttcttcagctctt |
31030672 |
T |
|
| Q |
103 |
atggcattgccaaggaggaagaattattataatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31030671 |
atggcattgccaaggaggaagaattattatgatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttc |
31030572 |
T |
|
| Q |
203 |
aaagaaaaggcatttttgcatttagagacgacgctaatcttcaaaaaggtgaatccataccacccaagctcattcgtgcaattgaagggtctcaggtttt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31030571 |
aaagaaaaggcatttttgcatttagagacgacactaatcttcaaaaaggtgaatccataccacccgagctcattcgtgcaattgaagggtctcaggtttt |
31030472 |
T |
|
| Q |
303 |
cattgcggtcctctccaaaaactatgcttcctcaacttggtgcttgcgagaattggtacacatccttcactgcagtcaagtttctggaagacgtgttctt |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31030471 |
cattgcggtcctctccaaaaactatgcttcctcaacttggtgcttgcgagaattggtacacatccttgactgcagtcaagtttctggaagacgtgttctt |
31030372 |
T |
|
| Q |
403 |
cctgttttttatgatgttgatccttttgaggtgagacatc |
442 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31030371 |
cctgttttttatgatgttgatccttctgaggtgagacatc |
31030332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 124 - 442
Target Start/End: Original strand, 31488783 - 31489101
Alignment:
| Q |
124 |
aattattataatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcat |
223 |
Q |
| |
|
||||||||| | |||||||||||||| ||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31488783 |
aattattatgacgtgtttgtcaccttcagaggtgaagatactcgcttcaactttactgatcatctttttgctgcccttcaaagaaaaggcatttttgcgt |
31488882 |
T |
|
| Q |
224 |
ttagagacgacgctaatcttcaaaaaggtgaatccataccacccaagctcattcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaa |
323 |
Q |
| |
|
||||||| ||| |||| ||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31488883 |
ttagagatgacactaagcttcaaaaaggtgaatcgatagcacccgagctcattcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaa |
31488982 |
T |
|
| Q |
324 |
ctatgcttcctcaacttggtgcttgcgagaattggtacacatccttcactgcagtcaagtttctggaagacgtgttcttcctgttttttatgatgttgat |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31488983 |
ctatgcttcctcaacttggtgcttgcgagaattggaatacatccttcactacagtcaagtttttggaagacgtgttcttcctgttttttatgatgttgat |
31489082 |
T |
|
| Q |
424 |
ccttttgaggtgagacatc |
442 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
31489083 |
ccttctgaggtgagacatc |
31489101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 181 - 442
Target Start/End: Complemental strand, 31160114 - 31159853
Alignment:
| Q |
181 |
gatcatctttttgctgcccttcaaagaaaaggcatttttgcatttagagacgacgctaatcttcaaaaaggtgaatccataccacccaagctcattcgtg |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| || || || |||| || | ||||||||||||||| ||||| ||||| ||| || |
|
|
| T |
31160114 |
gatcatctttttgctgcccttcaaagaaaaggcatcgttgcattcagggatgattctaacctgaagaaaggtgaatccatagcacccgagctccttcatg |
31160015 |
T |
|
| Q |
281 |
caattgaagggtctcaggttttcattgcggtcctctccaaaaactatgcttcctcaacttggtgcttgcgagaattggtacacatccttcactgcagtca |
380 |
Q |
| |
|
||||||||| || ||||||| |||| || |||| |||||||||||||||||||| |||||||||||||| |||| | ||||||||||||||||||| |
|
|
| T |
31160014 |
caattgaagcctcaaaggtttttattgtactcttctcaaaaaactatgcttcctcaacatggtgcttgcgagagttggaatacatccttcactgcagtca |
31159915 |
T |
|
| Q |
381 |
agtttctggaagacgtgttcttcctgttttttatgatgttgatccttttgaggtgagacatc |
442 |
Q |
| |
|
||||||||||| |||||||| ||| |||| |||||||||||||||| |||||||||||||| |
|
|
| T |
31159914 |
agtttctggaactcgtgttctccctattttctatgatgttgatccttctgaggtgagacatc |
31159853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 61 - 356
Target Start/End: Original strand, 31496075 - 31496370
Alignment:
| Q |
61 |
attcagatggctagcagcagcaactcctcttcttcatctcttatggcattgccaaggaggaagaattattataatgtgtttgtcacctttagaggcgaag |
160 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||| || ||| ||||||||||| ||| ||||| | |||||||||||||||||||| || | |
|
|
| T |
31496075 |
attcagatggctagcagcagcaactccacttcttcagctctagtgacatcgccaaggaggagcaatcattatgacgtgtttgtcacctttagaggtgagg |
31496174 |
T |
|
| Q |
161 |
atactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatttagagacgacgctaatcttcaaaaaggtgaatccat |
260 |
Q |
| |
|
| |||||| ||| |||| |||||||||||||| | || | || ||| ||||||||| |||||||||||| ||| ||||||||| ||||||||||||||| |
|
|
| T |
31496175 |
acactcgcaacaatttcactgatcatctttttgataccttccacagagaaggcatttctgcatttagagatgacactaatcttccaaaaggtgaatccat |
31496274 |
T |
|
| Q |
261 |
accacccaagctcattcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaactatgcttcctcaacttggtgcttgcgagaatt |
356 |
Q |
| |
|
| ||| |||||| || ||||||||||| ||||||||||| ||| |||| | || | |||||||||| |||||||| |||||||| |||||| |
|
|
| T |
31496275 |
aggacctaagctcctttgtgcaattgaaaactctcaggtttttgttgtggtcttatcaaggaactatgctttctcaacttcgtgcttgcaagaatt |
31496370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 63 - 426
Target Start/End: Original strand, 31501241 - 31501610
Alignment:
| Q |
63 |
tcagatggctagcagcagcaactcctcttcttcatctcttatggc------attgccaaggaggaagaattattataatgtgtttgtcacctttagaggc |
156 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||| || | | ||||||||||||||||||||||| ||| ||||||||| |||||||| |
|
|
| T |
31501241 |
tcagatggctagcagcaacaactcctcttcttcggctcttgtgactgtgacactgccaaggaggaagaattattatgatgcgtttgtcacttttagaggt |
31501340 |
T |
|
| Q |
157 |
gaagatactcgcttcaacttcattgatcatctttttgctgcccttcaa-agaaaaggcatttttgcatttagagacgacgctaatcttcaaaaaggtgaa |
255 |
Q |
| |
|
||||| |||||| ||| |||| | |||||||||||| || ||||||| ||| |||||||| |||||||||| || ||| ||||||||| |||||||||| |
|
|
| T |
31501341 |
gaagacactcgcaacaatttcacttatcatctttttgatg-ccttcaacagagaaggcattcttgcatttagggatgacactaatcttccaaaaggtgaa |
31501439 |
T |
|
| Q |
256 |
tccataccacccaagctcattcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaactatgcttcctcaacttggtgcttgcgagaat |
355 |
Q |
| |
|
|||||| || || |||| ||||||||||||||| ||| | |||| ||||||||||||| | |||||||||||||||| ||||||||||| ||||| |
|
|
| T |
31501440 |
tccatagcatccgagcttcttcgtgcaattgaagattcttatatttttgttgcggtcctctcaaggaactatgcttcctcaatttggtgcttgcaagaat |
31501539 |
T |
|
| Q |
356 |
tggtacacatccttcactgcagtcaagtttctggaagacgtgttcttcctgttttttatgatgttgatcct |
426 |
Q |
| |
|
| | | | |||||| | ||| || || ||| || || |||||| |||||||| ||||||||||||||| |
|
|
| T |
31501540 |
tagaaaagatccttgaatgcgtccacgtatctaaaaaacatgttctgcctgttttctatgatgttgatcct |
31501610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 136 - 427
Target Start/End: Complemental strand, 31529418 - 31529127
Alignment:
| Q |
136 |
gtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatttagagacgacg |
235 |
Q |
| |
|
|||||| ||| ||| ||||| | ||| || || |||||||||| ||||||||||||| | ||||| |||| || ||||||| ||||||||||||| ||| |
|
|
| T |
31529418 |
gtgtttatcagcttcagaggagcagacacacgattcaacttcactgatcatcttttttccgccctccaaataagaggcattgttgcatttagagatgaca |
31529319 |
T |
|
| Q |
236 |
ctaatcttcaaaaaggtgaatccataccacccaagctcattcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaactatgcttcctc |
335 |
Q |
| |
|
|||| ||| | ||||||||||| ||| |||| | ||| ||||||| || |||| |||| | |||||||| ||| |||| || |||||||||||||| |
|
|
| T |
31529318 |
ctaagcttaagaaaggtgaatctatagcacctgaactccttcgtgctatcgaagcctctcggactttcattgttgtcttctcaaacaactatgcttcctc |
31529219 |
T |
|
| Q |
336 |
aacttggtgcttgcgagaattggtacacatccttcactgcagtcaagtttctggaagacgtgttcttcctgttttttatgatgttgatcctt |
427 |
Q |
| |
|
||||||||||||||| |||||| | |||||||||| ||| ||| ||||||||| ||||||||| |||||||| |||||||||||||||| |
|
|
| T |
31529218 |
aacttggtgcttgcgggaattgcaatacatccttcattgcgtacaactttctggaaaacgtgttctccctgttttctatgatgttgatcctt |
31529127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 51 - 368
Target Start/End: Original strand, 31476122 - 31476442
Alignment:
| Q |
51 |
aatttagcatattcagatggctagcagcagcaactcctcttcttcatctcttatggcattgccaaggaggaa---gaattattataatgtgtttgtcacc |
147 |
Q |
| |
|
|||||| | |||||| ||||||||||||| |||| ||||||||| | |||| || ||||||||| | ||| ||| | |||| | |||||||| | | |
|
|
| T |
31476122 |
aatttatcttattcatatggctagcagcaacaacccctcttctttagctctggtgacattgccaaaaaagaaaaagaacttttatgacgtgtttgtgagc |
31476221 |
T |
|
| Q |
148 |
tttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatttagagacgacgctaatcttcaaa |
247 |
Q |
| |
|
|| ||||| |||||||||||| ||| |||| |||| ||||||| |||||| || |||||| ||||||||||||| || ||| |||||||||||| |
|
|
| T |
31476222 |
ttcagaggtgaagatactcgcaacaatttcactgatttcctttttgatgccctcgaagaaaaaggtgtttttgcatttagggatgacactaatcttcaaa |
31476321 |
T |
|
| Q |
248 |
aaggtgaatccataccacccaagctcattcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaactatgcttcctcaacttggtgctt |
347 |
Q |
| |
|
|||||||||||||| |||| | ||| ||| ||||||||||||||||||||||||| ||| |||| | || || ||||| |||| ||||||||||||||| |
|
|
| T |
31476322 |
aaggtgaatccatagcacctgaactctttcatgcaattgaagggtctcaggttttcgttgtggtcttgtcaaagaactacgctttctcaacttggtgctt |
31476421 |
T |
|
| Q |
348 |
gcgagaattggtacacatcct |
368 |
Q |
| |
|
| |||||||| | ||||||| |
|
|
| T |
31476422 |
gaaagaattggaatacatcct |
31476442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 124 - 425
Target Start/End: Complemental strand, 31151272 - 31150972
Alignment:
| Q |
124 |
aattattataatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcat |
223 |
Q |
| |
|
||||||||| | |||||||||| ||||||||| ||||||| ||| ||||||||| ||||||||||||||||||||| ||||||||| ||||||| ||| |
|
|
| T |
31151272 |
aattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaa-tcattttttcat |
31151174 |
T |
|
| Q |
224 |
ttagagacgacgctaatcttcaaaaaggtgaatccataccacccaagctcattcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaa |
323 |
Q |
| |
|
| || || || |||| || | ||||||||||||||| |||| | ||| |||| |||||||||| |||||| |||| ||| ||| |||| || || |
|
|
| T |
31151173 |
tcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttgtggttttctctaagaa |
31151074 |
T |
|
| Q |
324 |
ctatgcttcctcaacttggtgcttgcgagaattggtacacatccttcactgcagtcaagtttctggaagacgtgttcttcctgttttttatgatgttgat |
423 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||| ||| ||||| || |||| | ||||||| ||||||||| ||||| || |||||||||||| |
|
|
| T |
31151073 |
ctatgcttcctcagtttggtgtttgcgagaattggagtgcatacttcaaagctttcaactatctggaaaacgtgttctgcctgtgttctatgatgttgat |
31150974 |
T |
|
| Q |
424 |
cc |
425 |
Q |
| |
|
|| |
|
|
| T |
31150973 |
cc |
31150972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 322 - 438
Target Start/End: Complemental strand, 31162352 - 31162234
Alignment:
| Q |
322 |
aactatgcttcctcaact--tggtgcttgcgagaattggtacacatccttcactgcagtcaagtttctggaagacgtgttcttcctgttttttatgatgt |
419 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||| | | |||||||||||||| | |||| || | ||| | |||||| |||||||| |||||||| |
|
|
| T |
31162352 |
aactatgcttcctcaactattggtgcttgcaagaattagaatccatccttcactgcattaaagtctccgaaaggcatgttctgcctgttttctatgatgt |
31162253 |
T |
|
| Q |
420 |
tgatccttttgaggtgaga |
438 |
Q |
| |
|
|||||||| |||| ||||| |
|
|
| T |
31162252 |
tgatccttatgagatgaga |
31162234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 275 - 370
Target Start/End: Original strand, 31482185 - 31482280
Alignment:
| Q |
275 |
ttcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaactatgcttcctcaacttggtgcttgcgagaattggtacacatccttc |
370 |
Q |
| |
|
||||||||||||||| |||||| ||||||| | |||| | || || | |||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
31482185 |
ttcgtgcaattgaagtctctcagattttcatcgtggtcttgtctaagagttatgcttcctcaacttggtgcttgcgtgaattggtatacatccttc |
31482280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 31023642 - 31023588
Alignment:
| Q |
158 |
aagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaagg |
212 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||| || | | ||||||||| |
|
|
| T |
31023642 |
aagacactcgctacaacttcattgatcatctttttgcttccttccgaagaaaagg |
31023588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 112; Significance: 2e-56; HSPs: 18)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 136 - 435
Target Start/End: Complemental strand, 12782386 - 12782087
Alignment:
| Q |
136 |
gtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatttagagacgacg |
235 |
Q |
| |
|
|||||||| | ||| |||||| ||| || || ||||| |||| |||||||||||||| |||||||||||||||| | |||||| |||| ||||| ||| |
|
|
| T |
12782386 |
gtgtttgtgagcttcagaggcacagacacacgtttcaatttcactgatcatctttttggtgcccttcaaagaaaaagaatttttacattcagagatgaca |
12782287 |
T |
|
| Q |
236 |
ctaatcttcaaaaaggtgaatccataccacccaagctcattcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaactatgcttcctc |
335 |
Q |
| |
|
||||||||||||||||| | |||||| || || | ||||||| ||||||||||| |||||||||||||||| || |||| |||||||||||||| || |
|
|
| T |
12782286 |
ctaatcttcaaaaaggtaattccatagcatccgacctcattcaagcaattgaaggctctcaggttttcattgttgtattctctaaaaactatgcttcttc |
12782187 |
T |
|
| Q |
336 |
aacttggtgcttgcgagaattggtacacatccttcactgcagtcaagtttctggaagacgtgttcttcctgttttttatgatgttgatccttttgaggtg |
435 |
Q |
| |
|
||||||||| ||||||||||| | | |||||||| |||||||| | | | ||||| ||| ||||| |||||||||||||||||||||| || ||||||| |
|
|
| T |
12782186 |
aacttggtgtttgcgagaattagcatacatccttaactgcagtgtattgtatggaaaacgcgttctgcctgttttttatgatgttgatctttctgaggtg |
12782087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 136 - 434
Target Start/End: Complemental strand, 12785825 - 12785527
Alignment:
| Q |
136 |
gtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatttagagacgacg |
235 |
Q |
| |
|
|||||||| | |||||||||| ||| || |||||||| |||| |||||||||||||||||||| |||||| ||||||| |||||| ||||| ||| |
|
|
| T |
12785825 |
gtgtttgtgagctttagaggcccagacacacgcttcaatttcaccgatcatctttttgctgccctacaaagacgaggcattaatgcattcagagatgaca |
12785726 |
T |
|
| Q |
236 |
ctaatcttcaaaaaggtgaatccataccacccaagctcattcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaactatgcttcctc |
335 |
Q |
| |
|
|||| ||| |||||||||||| |||| ||||| ||| || | |||||||||| |||||| ||| ||||| || |||| || ||||||||||| || |
|
|
| T |
12785725 |
ctaaacttaaaaaaggtgaattcatagcacccggactctttagagcaattgaagcctctcagctttacattgttgtattctctaagaactatgcttcttc |
12785626 |
T |
|
| Q |
336 |
aacttggtgcttgcgagaattggtacacatccttcactgcagtcaagtttctggaagacgtgttcttcctgttttttatgatgttgatccttttgaggt |
434 |
Q |
| |
|
||||||||| ||||||||||||| | |||||||||| |||||| || | ||||| || |||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
12785625 |
aacttggtgtttgcgagaattggaatacatccttcattgcagtaaaaaatatggaaaacacattcttcctattttttatgatgttgatccttctgaggt |
12785527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 136 - 434
Target Start/End: Complemental strand, 12781635 - 12781337
Alignment:
| Q |
136 |
gtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatttagagacgacg |
235 |
Q |
| |
|
|||||||| | |||||||||| ||| || |||||||| |||| |||||| ||| ||||||||| |||||| ||||||| |||||| ||||| ||| |
|
|
| T |
12781635 |
gtgtttgtgagctttagaggcccagacacacgcttcaatttcaccgatcatttttgtgctgccctacaaagacgaggcattaatgcattcagagatgaca |
12781536 |
T |
|
| Q |
236 |
ctaatcttcaaaaaggtgaatccataccacccaagctcattcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaactatgcttcctc |
335 |
Q |
| |
|
|||| ||| ||||||| |||| |||| ||||| ||| || | |||||||||| |||||||||| ||||| || |||| || |||||||||||||| |
|
|
| T |
12781535 |
ctaaacttaaaaaaggcgaattcatagcacccggactctttagagcaattgaagcctctcaggtttacattgttgtattctctaagaactatgcttcctc |
12781436 |
T |
|
| Q |
336 |
aacttggtgcttgcgagaattggtacacatccttcactgcagtcaagtttctggaagacgtgttcttcctgttttttatgatgttgatccttttgaggt |
434 |
Q |
| |
|
||||||||| ||||||||||||| | |||||||||| |||||| || ||||| || |||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
12781435 |
aacttggtgtttgcgagaattggaatacatccttcattgcagtaaaaaacatggaaaacacgttcttcctgttttctatgatgttgatccttctgaggt |
12781337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 128 - 435
Target Start/End: Complemental strand, 33361392 - 33361085
Alignment:
| Q |
128 |
attataatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatttag |
227 |
Q |
| |
|
||||| |||||||||||| ||||||||| ||||| |||||| ||| |||| |||| |||||||| ||||||||||| |||||||||| ||| |||| |
|
|
| T |
33361392 |
attatgatgtgtttgtcatctttagaggtgaagacactcgcaacaatttcactgattttctttttgatgcccttcaaacaaaaggcattattgtattttt |
33361293 |
T |
|
| Q |
228 |
agacgacgctaatcttcaaaaaggtgaatccataccacccaagctcattcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaactat |
327 |
Q |
| |
|
|| ||| ||||||||| ||||||||||||||| |||| |||||||||| ||||| ||||| ||||||||||| |||| || | || | ||||||| |
|
|
| T |
33361292 |
ggatgacactaatcttccaaaaggtgaatccatcggacccgagctcattcgagcaatcgaaggatctcaggtttttgttgcattcttttcaagaaactat |
33361193 |
T |
|
| Q |
328 |
gcttcctcaacttggtgcttgcgagaattggtacacatccttcactgcagtcaagtttctggaagacgtgttcttcctgttttttatgatgttgatcctt |
427 |
Q |
| |
|
||||||||||| ||||| |||| |||||| | | | || | | |||| | | | || |||| || ||||||||||||||| |||||||||||||||| |
|
|
| T |
33361192 |
gcttcctcaacatggtgtttgcaagaattagaaaagatatgtgaatgcattaagggatcaggaaaacatgttcttcctgttttctatgatgttgatcctt |
33361093 |
T |
|
| Q |
428 |
ttgaggtg |
435 |
Q |
| |
|
||||||| |
|
|
| T |
33361092 |
ctgaggtg |
33361085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 127 - 356
Target Start/End: Complemental strand, 33307381 - 33307152
Alignment:
| Q |
127 |
tattataatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcattta |
226 |
Q |
| |
|
|||||| |||||||||||||||| ||||| ||||| |||||| |||||| | |||| |||||||| ||||||| ||| ||||||||||||||||||| |
|
|
| T |
33307381 |
tattatgatgtgtttgtcaccttcagaggtgaagacactcgcaacaactttactgattttctttttgatgcccttgaaacaaaaggcatttttgcatttc |
33307282 |
T |
|
| Q |
227 |
gagacgacgctaatcttcaaaaaggtgaatccataccacccaagctcattcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaacta |
326 |
Q |
| |
|
| || ||| ||||||||||||| |||||||| ||| ||| ||||| |||| ||||| ||||| |||| |||||| |||| ||| |||| | ||||| |
|
|
| T |
33307281 |
gggatgacactaatcttcaaaagggtgaatctatagaacctgagctccttcgagcaatcgaaggatctcgggtttttgttgcagtcttctcaaggaacta |
33307182 |
T |
|
| Q |
327 |
tgcttcctcaacttggtgcttgcgagaatt |
356 |
Q |
| |
|
|||||||||||| |||||| ||| |||||| |
|
|
| T |
33307181 |
tgcttcctcaacatggtgcctgcaagaatt |
33307152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 128 - 435
Target Start/End: Complemental strand, 33060449 - 33060142
Alignment:
| Q |
128 |
attataatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatttag |
227 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||| ||| |||| |||| |||||||| ||||||| ||| |||||||||| | | |||| | |
|
|
| T |
33060449 |
attatgatgtgtttgtcacctttagaggtgaagatactcgcaacaatttcactgattttctttttgatgcccttgaaacaaaaggcattatggtatttcg |
33060350 |
T |
|
| Q |
228 |
agacgacgctaatcttcaaaaaggtgaatccataccacccaagctcattcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaactat |
327 |
Q |
| |
|
|| | | |||||||||||||||||||| |||| ||| |||| |||||||||| ||| |||||||||| | ||||| || |||| || |||||| |
|
|
| T |
33060349 |
ggatgtcattaatcttcaaaaaggtgaatgcataggacctgagctttttcgtgcaatcgaaatatctcaggtttacgttgcgatcttctcaaagaactat |
33060250 |
T |
|
| Q |
328 |
gcttcctcaacttggtgcttgcgagaattggtacacatccttcactgcagtcaagtttctggaagacgtgttcttcctgttttttatgatgttgatcctt |
427 |
Q |
| |
|
||||||||||| |||||||||| |||||| | | | || | | |||| | | | || |||| || ||||||||||||||| |||||||||||||||| |
|
|
| T |
33060249 |
gcttcctcaacgtggtgcttgcaagaattagaaaagatatgtgaatgcattaaggggtcgggaaaacatgttcttcctgttttctatgatgttgatcctt |
33060150 |
T |
|
| Q |
428 |
ttgaggtg |
435 |
Q |
| |
|
||||||| |
|
|
| T |
33060149 |
ctgaggtg |
33060142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 124 - 344
Target Start/End: Complemental strand, 33265780 - 33265560
Alignment:
| Q |
124 |
aattattataatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcat |
223 |
Q |
| |
|
||||||||| |||| ||||||||||| ||||| ||||||||||| ||| |||| ||| |||||||| ||||||||||| |||||||||| ||| || |
|
|
| T |
33265780 |
aattattatgatgtatttgtcaccttcagaggtgaagatactcggaacaatttcacagattttctttttgatgcccttcaaacaaaaggcattattgtat |
33265681 |
T |
|
| Q |
224 |
ttagagacgacgctaatcttcaaaaaggtgaatccataccacccaagctcattcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaa |
323 |
Q |
| |
|
|| || ||| ||||||||| ||||||||||||||| |||| ||||| |||| ||||| ||||| ||||| ||||| |||||||| | || | ||| |
|
|
| T |
33265680 |
tttcggatgacactaatcttccaaaaggtgaatccattggacccgagctccttcgagcaatcgaaggatctcaagtttttgttgcggtcttttcaataaa |
33265581 |
T |
|
| Q |
324 |
ctatgcttcctcaacttggtg |
344 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
33265580 |
ctatgcttcctcaacatggtg |
33265560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 124 - 344
Target Start/End: Complemental strand, 33274924 - 33274704
Alignment:
| Q |
124 |
aattattataatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcat |
223 |
Q |
| |
|
||||||||| |||| ||||||||||| ||||| ||||||||||| ||| |||| ||| |||||||| ||||||||||| |||||||||| ||| || |
|
|
| T |
33274924 |
aattattatgatgtatttgtcaccttcagaggtgaagatactcggaacaatttcacagattttctttttgatgcccttcaaacaaaaggcattattgtat |
33274825 |
T |
|
| Q |
224 |
ttagagacgacgctaatcttcaaaaaggtgaatccataccacccaagctcattcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaa |
323 |
Q |
| |
|
|| || ||| ||||||||| ||||||||||||||| |||| ||||| |||| ||||| ||||| ||||| ||||| |||||||| | || | ||| |
|
|
| T |
33274824 |
tttcggatgacactaatcttccaaaaggtgaatccattggacccgagctccttcgagcaatcgaaggatctcaagtttttgttgcggtcttttcaataaa |
33274725 |
T |
|
| Q |
324 |
ctatgcttcctcaacttggtg |
344 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
33274724 |
ctatgcttcctcaacatggtg |
33274704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 124 - 356
Target Start/End: Complemental strand, 33412816 - 33412584
Alignment:
| Q |
124 |
aattattataatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcat |
223 |
Q |
| |
|
||||||||| |||||||||||||||| ||||| ||||| |||||| ||| |||| |||| ||||||||| ||| ||| ||| ||||| |||| ||||| |
|
|
| T |
33412816 |
aattattatgatgtgtttgtcaccttcagaggtgaagacactcgcaacaatttcactgattatctttttgatgcacttgaaaccaaaggtatttatgcat |
33412717 |
T |
|
| Q |
224 |
ttagagacgacgctaatcttcaaaaaggtgaatccataccacccaagctcattcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaa |
323 |
Q |
| |
|
|||| || ||| | |||||| ||||||||||| |||| ||| ||||| |||||||||| ||||| |||||||||||| | || ||| | || | || |
|
|
| T |
33412716 |
ttagggatgacacaaatcttaaaaaaggtgaagtcataggacctgagctccttcgtgcaatcgaaggatctcaggttttcgtcgcagtcttttcaaggaa |
33412617 |
T |
|
| Q |
324 |
ctatgcttcctcaacttggtgcttgcgagaatt |
356 |
Q |
| |
|
||||||||||||||| |||||| ||| |||||| |
|
|
| T |
33412616 |
ctatgcttcctcaacatggtgcctgcaagaatt |
33412584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 124 - 347
Target Start/End: Complemental strand, 33403509 - 33403286
Alignment:
| Q |
124 |
aattattataatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcat |
223 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| ||||| ||||| ||| |||| |||| |||||||| ||||||| ||| ||||||||||||||||| |
|
|
| T |
33403509 |
aattattacgatgtgtttatcacctttagaggtgaagacactcggaacaatttcactgattttctttttgatgcccttgaaacaaaaggcatttttgcat |
33403410 |
T |
|
| Q |
224 |
ttagagacgacgctaatcttcaaaaaggtgaatccataccacccaagctcattcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaa |
323 |
Q |
| |
|
|| |||| ||| ||||||||||| | ||||||||| || |||| |||| |||| ||||| |||| | |||||||||| ||| ||| | || | || |
|
|
| T |
33403409 |
ttcgagatgacactaatcttcaacagggtgaatccttagaacccgagcttcttcgagcaatcaaaggatttcaggttttcgttgtcgtcttttcaaggaa |
33403310 |
T |
|
| Q |
324 |
ctatgcttcctcaacttggtgctt |
347 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
33403309 |
ctatgcttcctcaacatggtgctt |
33403286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 136 - 349
Target Start/End: Complemental strand, 33288461 - 33288248
Alignment:
| Q |
136 |
gtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatttagagacgacg |
235 |
Q |
| |
|
|||||| |||||||||||||||| || |||||| ||| |||| || | |||| || | ||| ||| ||| ||| || |||| ||||||||| || ||| |
|
|
| T |
33288461 |
gtgtttatcacctttagaggcgatgacactcgcaacaatttcactggttatctattagatgctcttaaaacaaacggtatttatgcatttagggatgaca |
33288362 |
T |
|
| Q |
236 |
ctaatcttcaaaaaggtgaatccataccacccaagctcattcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaactatgcttcctc |
335 |
Q |
| |
|
| |||||||||||||||||||||||| ||| ||||| |||| ||||| ||||| || ||||||||| |||| || |||| | ||||||||||||||| |
|
|
| T |
33288361 |
ccaatcttcaaaaaggtgaatccataggacctgagctccttcgagcaatcgaaggatcccaggttttcgttgcagtattctcaagaaactatgcttcctc |
33288262 |
T |
|
| Q |
336 |
aacttggtgcttgc |
349 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
33288261 |
aacatggtgcttgc |
33288248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 125 - 356
Target Start/End: Original strand, 31566307 - 31566538
Alignment:
| Q |
125 |
attattataatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatt |
224 |
Q |
| |
|
|||||||| |||| |||||||| || ||||| ||||| |||||| ||| ||||||||| |||||||| |||| || ||| |||||| ||||||| ||| |
|
|
| T |
31566307 |
attattatgatgtatttgtcactttcagaggtgaagacactcgcaacaatttcattgattttctttttgatgcctttgaaacaaaaggtatttttgtatt |
31566406 |
T |
|
| Q |
225 |
tagagacgacgctaatcttcaaaaaggtgaatccataccacccaagctcattcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaac |
324 |
Q |
| |
|
| | || || | |||||||||||||||||||||||| || |||| |||| ||||| |||| ||||| ||||| |||| ||| |||| | ||| |
|
|
| T |
31566407 |
tcgggatgatacaaatcttcaaaaaggtgaatccatagggcctgagcttcttcgagcaatccaaggatctcatgtttttgttgccgtcttctcaagaaat |
31566506 |
T |
|
| Q |
325 |
tatgcttcctcaacttggtgcttgcgagaatt |
356 |
Q |
| |
|
||||||||||| || |||||||||| |||||| |
|
|
| T |
31566507 |
tatgcttcctcgacatggtgcttgcaagaatt |
31566538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 125 - 354
Target Start/End: Complemental strand, 33390970 - 33390741
Alignment:
| Q |
125 |
attattataatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatt |
224 |
Q |
| |
|
|||||||| |||||||||||||||| |||| ||||| |||||| ||| ||||||||| |||||||| |||||| ||| |||||||||| ||| ||| |
|
|
| T |
33390970 |
attattatgatgtgtttgtcaccttccgaggtgaagacactcgcaacaatttcattgattttctttttgatgccctggaaacaaaaggcattcttgtatt |
33390871 |
T |
|
| Q |
225 |
tagagacgacgctaatcttcaaaaaggtgaatccataccacccaagctcattcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaac |
324 |
Q |
| |
|
| | || || |||||||||||||||||||||||| ||| | || ||| |||| ||||| |||||||||| ||||||| |||| | |||| |
|
|
| T |
33390870 |
tcgggataacagaaatcttcaaaaaggtgaatccataggacctgaacttcttcaatcaatcgaaggatctcaggtttatgttgcggttttctcaagaaac |
33390771 |
T |
|
| Q |
325 |
tatgcttcctcaacttggtgcttgcgagaa |
354 |
Q |
| |
|
||||||| |||||| ||||| |||| |||| |
|
|
| T |
33390770 |
tatgctttctcaacatggtgtttgcaagaa |
33390741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 345
Target Start/End: Original strand, 33641799 - 33642020
Alignment:
| Q |
124 |
aattattataatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcat |
223 |
Q |
| |
|
||||||||| ||||||||||||||| ||||| ||||| |||||| ||| || | |||| |||||||| ||||||| || |||||||||| | | || |
|
|
| T |
33641799 |
aattattatgatgtgtttgtcacctacagaggtgaagacactcgcaacaatttgactgattttctttttgatgcccttgaatcaaaaggcattatggtat |
33641898 |
T |
|
| Q |
224 |
ttagagacgacgctaatcttcaaaaaggtgaatccataccacccaagctcattcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaa |
323 |
Q |
| |
|
|| | || ||| |||||||||||||||||||| ||| | | |||| |||| ||||| ||| | ||||| |||| | | || ||| |||| | ||| |
|
|
| T |
33641899 |
ttcgggatgacattaatcttcaaaaaggtgaatatataggatctgagcttcttcgagcaatcgaaagatctcatgtttacgtagcagtcttctcaagaaa |
33641998 |
T |
|
| Q |
324 |
ctatgcttcctcaacttggtgc |
345 |
Q |
| |
|
||||||||||||||| |||||| |
|
|
| T |
33641999 |
ctatgcttcctcaacatggtgc |
33642020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 434
Target Start/End: Complemental strand, 33390699 - 33390661
Alignment:
| Q |
396 |
tgttcttcctgttttttatgatgttgatccttttgaggt |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33390699 |
tgttcttcctgttttttatgatgttgatccttctgaggt |
33390661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 435
Target Start/End: Complemental strand, 33412543 - 33412505
Alignment:
| Q |
397 |
gttcttcctgttttttatgatgttgatccttttgaggtg |
435 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
33412543 |
gttcttcctgttttttatgatattgatccttctgaggtg |
33412505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 396 - 434
Target Start/End: Original strand, 33642071 - 33642109
Alignment:
| Q |
396 |
tgttcttcctgttttttatgatgttgatccttttgaggt |
434 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
33642071 |
tgttcttcctattttttatgatgttgatccttctgaggt |
33642109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Complemental strand, 33307110 - 33307081
Alignment:
| Q |
398 |
ttcttcctgttttttatgatgttgatcctt |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
33307110 |
ttcttcctgttttttatgatgttgatcctt |
33307081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 128 - 435
Target Start/End: Original strand, 17437875 - 17438182
Alignment:
| Q |
128 |
attataatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatttag |
227 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||| ||| |||| |||| |||||||| |||||| ||||||||| ||||||||||||| | |
|
|
| T |
17437875 |
attatgatgtgtttgtcacctttagaggtgaagatactcgcaacaatttcactgattttctttttgacgcccttgaaagaaaagacatttttgcatttcg |
17437974 |
T |
|
| Q |
228 |
agacgacgctaatcttcaaaaaggtgaatccataccacccaagctcattcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaactat |
327 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||| | | |||| |||| ||||| ||||| ||||||||||| ||||||| |||| | | ||||| |
|
|
| T |
17437975 |
agatgacactaatcttcaaaaaggtgaatccataggatctgagcttcttcgagcaatagaaggatctcaggtttttgttgcggttttctcaagatactat |
17438074 |
T |
|
| Q |
328 |
gcttcctcaacttggtgcttgcgagaattggtacacatccttcactgcagtcaagtttctggaagacgtgttcttcctgttttttatgatgttgatcctt |
427 |
Q |
| |
|
||||||||||| ||||| ||| |||||| | | | || | | ||| ||| || | |||| || ||||||||||||||| |||||||||||||||| |
|
|
| T |
17438075 |
gcttcctcaacatggtgtttggaagaattagaaaagatatgtgaatgcgttcaggtgccaggaaaacatgttcttcctgttttctatgatgttgatcctt |
17438174 |
T |
|
| Q |
428 |
ttgaggtg |
435 |
Q |
| |
|
||||||| |
|
|
| T |
17438175 |
ctgaggtg |
17438182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1749 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold1749
Description:
Target: scaffold1749; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 58 - 356
Target Start/End: Complemental strand, 1104 - 812
Alignment:
| Q |
58 |
catattcagatggctagcagcagcaactcctcttcttcatctcttatggcattgccaaggaggaagaattattataatgtgtttgtcacctttagaggcg |
157 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| | | ||| || | ||||||||||| || || |||| | |||||||||||||| ||||| | |
|
|
| T |
1104 |
catattcagatggctagcagcagcaactcgtctacggc---tctggtgcctttgccaaggagaaa---ttgttatgacgtgtttgtcaccttcagaggtg |
1011 |
T |
|
| Q |
158 |
aagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatttagagacgacgctaatcttcaaaaaggtgaatc |
257 |
Q |
| |
|
||||||||||| ||| |||| | || |||||||||||||||| |||||||||| |||| ||| || || || ||| | ||||||| ||| |||||||| |
|
|
| T |
1010 |
aagatactcgcaacaatttcactaattttctttttgctgcccttgaaagaaaaggtatttatgctttcagggatgacacaaatcttccaaagggtgaatc |
911 |
T |
|
| Q |
258 |
cataccacccaagctcattcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaactatgcttcctcaacttggtgcttgcgagaatt |
356 |
Q |
| |
|
|||| ||| ||||| |||| |||| ||||| |||||||||||| |||| ||| | || | |||||||||||| ||||| |||||| ||| |||||| |
|
|
| T |
910 |
cataggacctgagctccttcgaacaatcgaaggatctcaggttttcgttgctgtcttatcaagaaactatgcttcttcaacatggtgcctgcaagaatt |
812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 58 - 356
Target Start/End: Complemental strand, 9865 - 9573
Alignment:
| Q |
58 |
catattcagatggctagcagcagcaactcctcttcttcatctcttatggcattgccaaggaggaagaattattataatgtgtttgtcacctttagaggcg |
157 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| | | ||| || | ||||||||||| || || |||| | |||||||||||||| ||||| | |
|
|
| T |
9865 |
catattcagatggctagcagcagcaactcgtctacggc---tctggtgcctttgccaaggagaaa---ttgttatgacgtgtttgtcaccttcagaggtg |
9772 |
T |
|
| Q |
158 |
aagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatttagagacgacgctaatcttcaaaaaggtgaatc |
257 |
Q |
| |
|
||||||||||| ||| |||| | || |||||||||||||||| |||||||||| |||| ||| || || || ||| | ||||||| ||| |||||||| |
|
|
| T |
9771 |
aagatactcgcaacaatttcactaattttctttttgctgcccttgaaagaaaaggtatttatgctttcagggatgacacaaatcttccaaagggtgaatc |
9672 |
T |
|
| Q |
258 |
cataccacccaagctcattcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaactatgcttcctcaacttggtgcttgcgagaatt |
356 |
Q |
| |
|
|||| ||| ||||| |||| |||| ||||| |||||||||||| |||| ||| | || | |||||||||||| ||||| |||||| ||| |||||| |
|
|
| T |
9671 |
cataggacctgagctccttcgaacaatcgaaggatctcaggttttcgttgctgtcttatcaagaaactatgcttcttcaacatggtgcctgcaagaatt |
9573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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