View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20314_low_10 (Length: 437)
Name: NF20314_low_10
Description: NF20314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20314_low_10 |
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| [»] scaffold0197 (1 HSPs) |
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Alignment Details
Target: scaffold0197 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 15 - 421
Target Start/End: Original strand, 23050 - 23456
Alignment:
| Q |
15 |
caaaggaagaaacaaaacatgaatatatcccaaacacaaaaaacttccctttgaacaaagcagatgaaagtgaagatgatgagtttccagatcgaaaatc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23050 |
caaaggaagaaacaaaacatgaatatatcccaaacacaaaaaacttccctttgaacaaagcagatgaaagtgaagatgatgagtttccagatcgaaaatc |
23149 |
T |
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| Q |
115 |
aacaggaagaggaggagctaaatcccaagaacccaaaagagggtcatagatttcaacatctaaacgatcttctatatcaacaaggttaccaataaaccta |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23150 |
aacaggaagaggaggagctaaatcccaagaacccaaaagagggtcatagatttcaacatctaaacgatcttctatatcaacaaggttaccaataaaccta |
23249 |
T |
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| Q |
215 |
acaccaccaacaacaataaacttcaaagacaaaccatcattgaaaacacctaaaagaggattaatcctaggaaaatgaagaggtggagtagaactccaag |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23250 |
acaccaccaacaacaataaacttcaaagacaaaccatcattgaaaacacctaaaagaggattaatcctaggaaaatgaagaggtggagtagaactccaag |
23349 |
T |
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| Q |
315 |
caagaggacgtagaattgaagtatagacaaagttaggtgccgtgatgaagaagtaagatgaagtaccaataaaagaagtgttgttaggatagtgaagagg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23350 |
caagaggacgtagaattgaagtatagacaaagttaggtgccgtgatgaagaagtaagatgaagtaccaataaaagaagtgttgttaggatagtgaagagg |
23449 |
T |
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| Q |
415 |
ttgttga |
421 |
Q |
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| T |
23450 |
ttgttga |
23456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 15 - 421
Target Start/End: Original strand, 21309435 - 21309841
Alignment:
| Q |
15 |
caaaggaagaaacaaaacatgaatatatcccaaacacaaaaaacttccctttgaacaaagcagatgaaagtgaagatgatgagtttccagatcgaaaatc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21309435 |
caaaggaagaaacaaaacatgaatatatcccaaacacaaaaaacttccctttgaacaaagcagatgaaagtgaagatgatgagtttccagatcgaaaatc |
21309534 |
T |
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| Q |
115 |
aacaggaagaggaggagctaaatcccaagaacccaaaagagggtcatagatttcaacatctaaacgatcttctatatcaacaaggttaccaataaaccta |
214 |
Q |
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| T |
21309535 |
aacaggaagaggaggagctaaatcccaagaacccaaaagagggtcatagatttcaacatctaaacgatcttctatatcaacaaggttaccaataaaccta |
21309634 |
T |
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| Q |
215 |
acaccaccaacaacaataaacttcaaagacaaaccatcattgaaaacacctaaaagaggattaatcctaggaaaatgaagaggtggagtagaactccaag |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21309635 |
acaccaccaacaacaataaacttcaaagacaaaccatcattgaaaacacctaaaagaggattaatcctaggaaaatgaagaggtggagtagaactccaag |
21309734 |
T |
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| Q |
315 |
caagaggacgtagaattgaagtatagacaaagttaggtgccgtgatgaagaagtaagatgaagtaccaataaaagaagtgttgttaggatagtgaagagg |
414 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21309735 |
caagaggacgcagaattgaagtatagacaaagttaggtgccgtgatgaagaagtaagatgaagtaccaataaaagaagtgttgttaggatagtgaagagg |
21309834 |
T |
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| Q |
415 |
ttgttga |
421 |
Q |
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||||||| |
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| T |
21309835 |
ttgttga |
21309841 |
T |
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