View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20314_low_16 (Length: 403)
Name: NF20314_low_16
Description: NF20314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20314_low_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 2 - 381
Target Start/End: Original strand, 17923306 - 17923681
Alignment:
| Q |
2 |
tactcgtatactatttttaattttcataattttcttacgtttgattgatggtgtggttattnnnnnnntggatacgccaacctaatcttgtagcaagaaa |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
17923306 |
tactcgtatactatttttaattttcataattttcttacgtttgattgatggtgtggttattcaaaaaatggatacgccaacctaatcttgtagctagaaa |
17923405 |
T |
|
| Q |
102 |
agtgctcataccaaatttttatataccattataattcttcaagactcacaagtattctaagtattaagtaagtaaccctttaggtatagatcactctata |
201 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
17923406 |
agtgcccataccaaatttttatataccattataattcttcaagactcacaagtattctaagtattaag----taaccctttaggtatagatcactctata |
17923501 |
T |
|
| Q |
202 |
aggatttaggatggtctagcagtcttattgttctaatctcactttgtacctgaaacatggtttggccataatattgactaattgaagtaacacatttatt |
301 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17923502 |
aggatttaggatggtctagcagtctcattgttctaatctcactttgtacctgaaacatggtttggccataatattgactaattgaagtaacacatttatt |
17923601 |
T |
|
| Q |
302 |
tagttgggaaatcagtacattgcagaagaaatttctcctttagttgcctatgaaatggggaatctagtcattagtagact |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17923602 |
tagttgggaaatcagtacattgcagaagaaatttctcctttagttgcctatgaaatggggaatctagtcattagtagact |
17923681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 228 - 276
Target Start/End: Original strand, 53615773 - 53615821
Alignment:
| Q |
228 |
attgttctaatctcactttgtacctgaaacatggtttggccataatatt |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
53615773 |
attgttctaatctcactttgtacctgaaacatgttttggccttaatatt |
53615821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University