View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20314_low_17 (Length: 389)

Name: NF20314_low_17
Description: NF20314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20314_low_17
NF20314_low_17
[»] chr4 (14 HSPs)
chr4 (19-380)||(33997853-33998214)
chr4 (279-380)||(8747691-8747792)
chr4 (279-337)||(8749046-8749104)
chr4 (279-337)||(8896953-8897011)
chr4 (277-337)||(48157678-48157738)
chr4 (279-335)||(40168639-40168695)
chr4 (272-335)||(9397437-9397500)
chr4 (280-335)||(40169781-40169836)
chr4 (279-335)||(1961172-1961228)
chr4 (278-334)||(9178634-9178690)
chr4 (275-335)||(25011731-25011791)
chr4 (279-335)||(31435854-31435909)
chr4 (279-335)||(55780387-55780443)
chr4 (279-335)||(55844567-55844623)
[»] chr2 (10 HSPs)
chr2 (277-380)||(27553764-27553867)
chr2 (279-380)||(27552452-27552553)
chr2 (279-337)||(12812836-12812894)
chr2 (277-335)||(28851674-28851732)
chr2 (279-380)||(10851913-10852013)
chr2 (278-326)||(24192244-24192291)
chr2 (279-335)||(45413479-45413535)
chr2 (277-335)||(1389231-1389289)
chr2 (350-380)||(28617993-28618023)
chr2 (279-380)||(45412335-45412436)
[»] chr3 (11 HSPs)
chr3 (277-380)||(10584039-10584142)
chr3 (277-380)||(32829738-32829841)
chr3 (277-335)||(26722531-26722589)
chr3 (279-335)||(26723906-26723962)
chr3 (277-337)||(51219460-51219520)
chr3 (279-380)||(51220560-51220660)
chr3 (279-380)||(32831047-32831148)
chr3 (279-337)||(53157176-53157233)
chr3 (279-335)||(21326320-21326376)
chr3 (279-335)||(40630627-40630683)
chr3 (279-335)||(54539500-54539556)
[»] chr7 (5 HSPs)
chr7 (279-380)||(9805383-9805484)
chr7 (277-380)||(35080281-35080384)
chr7 (279-380)||(35081558-35081659)
chr7 (279-328)||(23621990-23622039)
chr7 (279-335)||(12961984-12962040)
[»] chr1 (13 HSPs)
chr1 (277-380)||(46525799-46525902)
chr1 (19-129)||(6230075-6230185)
chr1 (279-337)||(46312065-46312123)
chr1 (279-380)||(3000170-3000271)
chr1 (281-380)||(46524542-46524641)
chr1 (279-326)||(14512669-14512716)
chr1 (277-380)||(2999489-2999591)
chr1 (279-380)||(14204837-14204939)
chr1 (279-337)||(50379972-50380030)
chr1 (274-335)||(43706901-43706962)
chr1 (279-335)||(2425471-2425527)
chr1 (279-335)||(28920899-28920955)
chr1 (279-335)||(46313276-46313332)
[»] chr6 (8 HSPs)
chr6 (277-337)||(22417656-22417716)
chr6 (274-380)||(22418894-22419000)
chr6 (271-335)||(6978139-6978203)
chr6 (279-335)||(20409067-20409123)
chr6 (279-334)||(12181595-12181650)
chr6 (277-327)||(10120173-10120223)
chr6 (298-335)||(15888990-15889027)
chr6 (279-335)||(20410219-20410275)
[»] chr5 (11 HSPs)
chr5 (277-380)||(5504093-5504196)
chr5 (279-337)||(124529-124587)
chr5 (279-332)||(3597323-3597376)
chr5 (279-380)||(5502918-5503018)
chr5 (277-335)||(3598924-3598982)
chr5 (279-380)||(121349-121450)
chr5 (278-337)||(14189663-14189722)
chr5 (279-337)||(14190487-14190545)
chr5 (277-335)||(17414542-17414600)
chr5 (277-331)||(17415695-17415749)
chr5 (279-335)||(8061856-8061912)
[»] chr8 (4 HSPs)
chr8 (279-380)||(13882655-13882756)
chr8 (279-327)||(13883878-13883926)
chr8 (279-335)||(38612219-38612275)
chr8 (279-335)||(38613419-38613475)
[»] scaffold1875 (1 HSPs)
scaffold1875 (279-335)||(756-812)


Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 380
Target Start/End: Complemental strand, 33998214 - 33997853
Alignment:
Q  19 cattgaaagatttagcatcaattgcacctaaatgcttgtagggaccaatgtctctctttccaagctccatacttataccatacggatcccataactatgt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  33998214 cattgaaagatttagcatcaattgcacctaaatgcttgtagggaccaatgtctctcttttcaagctccacacttataccatacggatcccataactatgt 33998115  T
Q  119 tccttcaacacaaaagatttcaagttcataagggtgatgatatgttgttgccttcagaaatcagaacctgcattattcacagcactctttctcaagagaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33998114 tccttcaacacaaaagatttcaagttcataagggtgatgatatgttgttgccttcagaaatcagaacctgcattattcacagcactctttctcaagagaa 33998015  T
Q  219 tgcttgataatcactttatagctctttctgtcattgcccaaaactttcgcaaattatcttggctaaactacagttttgaccccctaagtttgctaatgtt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33998014 tgcttgataatcactttatagctctttctgtcattgcccaaaactttcgcaaattatcttggctaaactacagttttgaccccctaagtttgctaatgtt 33997915  T
Q  319 gcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccctttgc 380  Q
    ||||||||| |||||||||        |||||||||||||||||||||||||||||||||||    
T  33997914 gcgattttgaccccctaataaaaaaaatgaaaattttgccccctaagatttagcccctttgc 33997853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 279 - 380
Target Start/End: Original strand, 8747691 - 8747792
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 378  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||        |||| ||||||||||||| | ||||||||||||    
T  8747691 ggctaaactacagttttgaccccttaagtttgccaatgttgcgattttggccccctaataaaaaaaatgaatattttgccccctatgttttagccccttt 8747790  T
Q  379 gc 380  Q
    ||    
T  8747791 gc 8747792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 337
Target Start/End: Complemental strand, 8749104 - 8749046
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 337  Q
    |||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||    
T  8749104 ggctaaactacacttttgaccccttaagtttgccaatgttgcgattttggccccctaat 8749046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 279 - 337
Target Start/End: Complemental strand, 8897011 - 8896953
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 337  Q
    |||||||||||||||||||| |||||||||||| |||||| ||||||||| ||||||||    
T  8897011 ggctaaactacagttttgactccctaagtttgccaatgttacgattttggtcccctaat 8896953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 277 - 337
Target Start/End: Complemental strand, 48157738 - 48157678
Alignment:
Q  277 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 337  Q
    ||||||||||| ||||||||||||||||| |||  ||| | ||||||||||||||||||||    
T  48157738 ttggctaaactgcagttttgaccccctaactttcataaaggtgcgattttggccccctaat 48157678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 40168639 - 40168695
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 335  Q
    ||||||||| ||||||||||||||||| |||   |||| ||||||||||||||||||    
T  40168639 ggctaaactgcagttttgaccccctaacttttacaatggtgcgattttggcccccta 40168695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 272 - 335
Target Start/End: Complemental strand, 9397500 - 9397437
Alignment:
Q  272 ttatcttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 335  Q
    |||| ||||||||||| || |||| |||||||||||||   ||||||| |||||||||||||||    
T  9397500 ttattttggctaaactgcacttttcaccccctaagttttaaaatgttgggattttggcccccta 9397437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 280 - 335
Target Start/End: Complemental strand, 40169836 - 40169781
Alignment:
Q  280 gctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 335  Q
    |||||||| ||||||||||||||||| |||   |||| ||||||||||||||||||    
T  40169836 gctaaactgcagttttgaccccctaactttcacaatggtgcgattttggcccccta 40169781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 1961228 - 1961172
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 335  Q
    ||||||| | || |||| ||||||||||||||| || ||||| ||||||||||||||    
T  1961228 ggctaaagtgcactttttaccccctaagtttgcaaaagttgcaattttggcccccta 1961172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 334
Target Start/End: Original strand, 9178634 - 9178690
Alignment:
Q  278 tggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccct 334  Q
    |||||||||| ||||||||||| ||||| |||  ||| | |||||||||||||||||    
T  9178634 tggctaaactgcagttttgacctcctaactttcataaaggtgcgattttggccccct 9178690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 335
Target Start/End: Original strand, 25011731 - 25011791
Alignment:
Q  275 tcttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 335  Q
    ||||||||||||| || ||||   |||||||||||   |||||||||||||||||||||||    
T  25011731 tcttggctaaactccacttttcgtcccctaagtttcaaaatgttgcgattttggcccccta 25011791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 31435909 - 31435854
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 335  Q
    |||||||||||||||||| |||  || |||||| ||||||||||||||| |||||||    
T  31435909 ggctaaactacagttttggccct-tatgtttgccaatgttgcgattttgacccccta 31435854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 55780387 - 55780443
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 335  Q
    ||||||||| || ||||  |||| ||||||| | |||||||||||||||||||||||    
T  55780387 ggctaaacttcatttttcgccccttaagttttcaaatgttgcgattttggcccccta 55780443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 55844567 - 55844623
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 335  Q
    ||||||||| || ||||  |||| ||||||| | |||||||||||||||||||||||    
T  55844567 ggctaaacttcatttttcgccccttaagttttcaaatgttgcgattttggcccccta 55844623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 277 - 380
Target Start/End: Complemental strand, 27553867 - 27553764
Alignment:
Q  277 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccct 376  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||        |||||||||||||||||||||||||||||||    
T  27553867 ttggctaaactacagttttaaccccctaagtttgctaatgttgcgattttggcctcctaataaaaaaaatgaaaattttgccccctaagatttagcccct 27553768  T
Q  377 ttgc 380  Q
    ||||    
T  27553767 ttgc 27553764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 279 - 380
Target Start/End: Original strand, 27552452 - 27552553
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 378  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||        ||||||||| ||||||||||||||| |||||||    
T  27552452 ggctaaactacagttttgaccccctaaatttgccaatgttgcgattttggctccctaataaaaaaaatgaaaatttagccccctaagatttaaccccttt 27552551  T
Q  379 gc 380  Q
    ||    
T  27552552 gc 27552553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 279 - 337
Target Start/End: Original strand, 12812836 - 12812894
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 337  Q
    |||||| |||||||||||||| | ||||||||||||||||| |||||||||||||||||    
T  12812836 ggctaagctacagttttgacctcttaagtttgctaatgttgagattttggccccctaat 12812894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 335
Target Start/End: Complemental strand, 28851732 - 28851674
Alignment:
Q  277 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 335  Q
    ||||||||||| ||||||||||||||||| |||   ||||||||||||||| |||||||    
T  28851732 ttggctaaactgcagttttgaccccctaactttcacaatgttgcgattttgacccccta 28851674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 279 - 380
Target Start/End: Original strand, 10851913 - 10852013
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 378  Q
    ||||||||||||||||||||||||||| |||   ||||||||||||||  |||||| ||        |||||||||| ||||||| | ||||||||||||    
T  10851913 ggctaaactacagttttgaccccctaactttatcaatgttgcgattttaaccccct-attaaaaaaatgaaaattttaccccctatgttttagccccttt 10852011  T
Q  379 gc 380  Q
    ||    
T  10852012 gc 10852013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 326
Target Start/End: Original strand, 24192244 - 24192291
Alignment:
Q  278 tggctaaactacagttttgaccccctaagtttgctaatgttgcgatttt 326  Q
    ||||||||||||||||||| ||||  |||||||||||||||||||||||    
T  24192244 tggctaaactacagttttggcccca-aagtttgctaatgttgcgatttt 24192291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 45413535 - 45413479
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 335  Q
    ||||||||| ||||||||||||||||| |||   |||| ||||||||||||||||||    
T  45413535 ggctaaactgcagttttgaccccctaactttcacaatggtgcgattttggcccccta 45413479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 335
Target Start/End: Original strand, 1389231 - 1389289
Alignment:
Q  277 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 335  Q
    ||||||||||| ||||||| ||||||||| |||   |||| ||||||||||||||||||    
T  1389231 ttggctaaactgcagttttaaccccctaactttcagaatggtgcgattttggcccccta 1389289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 350 - 380
Target Start/End: Original strand, 28617993 - 28618023
Alignment:
Q  350 aattttgccccctaagatttagcccctttgc 380  Q
    |||||||||||||||||||||||||||||||    
T  28617993 aattttgccccctaagatttagcccctttgc 28618023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 380
Target Start/End: Original strand, 45412335 - 45412436
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 378  Q
    ||||||||| ||||||||||||||||| |||   |||| |||||||||| ||||||| |        |||||||||   |||||| ||||||||||||||    
T  45412335 ggctaaactgcagttttgaccccctaactttcacaatggtgcgattttgaccccctattaaaaaaaatgaaaatttaaacccctatgatttagccccttt 45412434  T
Q  379 gc 380  Q
    ||    
T  45412435 gc 45412436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 277 - 380
Target Start/End: Complemental strand, 10584142 - 10584039
Alignment:
Q  277 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccct 376  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||        | ||||||| |||||||||||||||||||||    
T  10584142 ttggctaaactacagttttgatcccctaagtttgccaatgttgcgattttggccccctaataaaaaaaattaaaatttggccccctaagatttagcccct 10584043  T
Q  377 ttgc 380  Q
    ||||    
T  10584042 ttgc 10584039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 277 - 380
Target Start/End: Original strand, 32829738 - 32829841
Alignment:
Q  277 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccct 376  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||        |||| ||||||||||||| | ||||||||||    
T  32829738 ttggctaaactacagttttgaccccctaagtttgccaattttgcgattttggccccctaataaaaaaaatgaatattttgccccctatgttttagcccct 32829837  T
Q  377 ttgc 380  Q
    ||||    
T  32829838 ttgc 32829841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 277 - 335
Target Start/End: Original strand, 26722531 - 26722589
Alignment:
Q  277 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 335  Q
    |||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||    
T  26722531 ttggctaaactacagttttggccccctaagtttaccaatgttgcgattttggcccccta 26722589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 26723962 - 26723906
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 335  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||    
T  26723962 ggctaaactacagttttggccccctaagtttactaatgttgcaattttggcccccta 26723906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 277 - 337
Target Start/End: Original strand, 51219460 - 51219520
Alignment:
Q  277 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 337  Q
    ||||||||||||||||||||||| ||||||||||  |||||||| ||||||||||||||||    
T  51219460 ttggctaaactacagttttgacctcctaagtttgtcaatgttgcaattttggccccctaat 51219520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 279 - 380
Target Start/End: Complemental strand, 51220660 - 51220560
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 378  Q
    ||||||||||||||||||||||| ||||||||  |||||||||||||| ||||||||||        |||| ||||||||||||| | ||||||||||||    
T  51220660 ggctaaactacagttttgaccccttaagtttgtcaatgttgcgattttagccccctaat-aaaaaaatgaatattttgccccctatgttttagccccttt 51220562  T
Q  379 gc 380  Q
    ||    
T  51220561 gc 51220560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 279 - 380
Target Start/End: Complemental strand, 32831148 - 32831047
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 378  Q
    |||||||||||||||||||||||||| |||||  ||||||||||||||| ||| |||||        ||||  |||||||||||| | ||||||||||||    
T  32831148 ggctaaactacagttttgaccccctatgtttgtcaatgttgcgattttgaccctctaataaaaaaaatgaattttttgccccctatgttttagccccttt 32831049  T
Q  379 gc 380  Q
    ||    
T  32831048 gc 32831047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 279 - 337
Target Start/End: Complemental strand, 53157233 - 53157176
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 337  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||| |||||| |||||    
T  53157233 ggctaaactacagttttgacccc-taagtttgccaatgttgcgattctggccctctaat 53157176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 21326320 - 21326376
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 335  Q
    |||||||||||| |||||||||| ||||||| | ||| |||| ||||||| ||||||    
T  21326320 ggctaaactacacttttgaccccttaagtttaccaatattgcaattttggtccccta 21326376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 40630683 - 40630627
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 335  Q
    ||||||| | || |||| ||||||||||||||| || ||||| ||||||||||||||    
T  40630683 ggctaaagtgcactttttaccccctaagtttgcaaaagttgcaattttggcccccta 40630627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 54539556 - 54539500
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 335  Q
    ||||||||| ||||||| ||||| ||| ||||  |||| ||||||||||||||||||    
T  54539556 ggctaaactgcagttttaaccccttaactttgacaatggtgcgattttggcccccta 54539500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 279 - 380
Target Start/End: Complemental strand, 9805484 - 9805383
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 378  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||        ||||||||| ||||||| |||||||||||||||    
T  9805484 ggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggccctctaatagaaaaaatgaaaatttggccccctgagatttagccccttt 9805385  T
Q  379 gc 380  Q
    ||    
T  9805384 gc 9805383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 277 - 380
Target Start/End: Original strand, 35080281 - 35080384
Alignment:
Q  277 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccct 376  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||        |||| ||||||||||||| | ||||||||||    
T  35080281 ttggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaataaaaaaaatgaatattttgccccctatgttttagcccct 35080380  T
Q  377 ttgc 380  Q
    ||||    
T  35080381 ttgc 35080384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 279 - 380
Target Start/End: Complemental strand, 35081659 - 35081558
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 378  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||        |||| ||||||||||||| | ||||||||||||    
T  35081659 ggctaaactacagttttgaccccctaagtttgtcaatgttgcgattttggcgccctaataaaaaaaatgaatattttgccccctatgttttagccccttt 35081560  T
Q  379 gc 380  Q
    ||    
T  35081559 gc 35081558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 328
Target Start/End: Complemental strand, 23622039 - 23621990
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttgg 328  Q
    |||||||||||||||||| || ||||||||||| ||||||||||||||||    
T  23622039 ggctaaactacagttttggcctcctaagtttgccaatgttgcgattttgg 23621990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 12961984 - 12962040
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 335  Q
    ||||||||| ||||||| ||||||||| |||   |||| ||||||||||||||||||    
T  12961984 ggctaaactgcagttttaaccccctaactttcacaatggtgcgattttggcccccta 12962040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 277 - 380
Target Start/End: Complemental strand, 46525902 - 46525799
Alignment:
Q  277 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccct 376  Q
    |||||||| ||||||||||| |||||||||||||| |||||||||||||||||| ||||||        ||||||||| |||||||||||||||||||||    
T  46525902 ttggctaatctacagttttggccccctaagtttgccaatgttgcgattttggcctcctaataaaaaaaatgaaaatttggccccctaagatttagcccct 46525803  T
Q  377 ttgc 380  Q
    ||||    
T  46525802 ttgc 46525799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 6230185 - 6230075
Alignment:
Q  19 cattgaaagatttagcatcaattgcacctaaatgcttgtagggaccaatgtctctctttccaagctccatacttataccatacggatcccataactatgt 118  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| || ||| ||||||  |||| ||  || |||||||| ||||| |||| |||    
T  6230185 cattgaaagatttagcatcaattgcacataaatgcttgtagggaccaatatccctccttccaaattccagacagatgccatacgggtcccaaaactctgt 6230086  T
Q  119 tccttcaacac 129  Q
    |||||||||||    
T  6230085 tccttcaacac 6230075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 337
Target Start/End: Original strand, 46312065 - 46312123
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 337  Q
    ||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||    
T  46312065 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctaat 46312123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 279 - 380
Target Start/End: Complemental strand, 3000271 - 3000170
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 378  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||||||  || |||||        | |||||||||||||||||| ||||||||||||    
T  3000271 ggctaaactacagttttgaccccttaattttgttaatgttgcgattttgatcctctaataaaaaaaataaaaattttgccccctaagttttagccccttt 3000172  T
Q  379 gc 380  Q
    ||    
T  3000171 gc 3000170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 281 - 380
Target Start/End: Original strand, 46524542 - 46524641
Alignment:
Q  281 ctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccctttgc 380  Q
    |||||||||||||||| |||||||||||| | |||||||| ||||||| ||||| ||        | ||||||| |||||||||||||||||||||||||    
T  46524542 ctaaactacagttttggccccctaagtttaccaatgttgcaattttggtcccctgataaaaaaaataaaaatttggccccctaagatttagcccctttgc 46524641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 279 - 326
Target Start/End: Complemental strand, 14512716 - 14512669
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgatttt 326  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||    
T  14512716 ggctaaactacagttttggccccctaagtttactaatgttgcgatttt 14512669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 380
Target Start/End: Original strand, 2999489 - 2999591
Alignment:
Q  277 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccct 376  Q
    |||||||||||||||||||||||| |||| ||||  |||||||||||||||  ||||||||        ||||||||||| |||||||  ||||||||||    
T  2999489 ttggctaaactacagttttgaccctctaactttgtcaatgttgcgattttgatcccctaat-aaaaaaatgaaaattttgacccctaaattttagcccct 2999587  T
Q  377 ttgc 380  Q
    ||||    
T  2999588 ttgc 2999591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 279 - 380
Target Start/End: Original strand, 14204837 - 14204939
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgcccc-ctaagatttagcccctt 377  Q
    |||||||||||||||||| |||| || |||||  |||| |||||||||||||| |||||        |||||||||| |||| |||||||||||||||||    
T  14204837 ggctaaactacagttttggccccttatgtttgacaatgctgcgattttggccctctaataaaaatattgaaaattttacccctctaagatttagcccctt 14204936  T
Q  378 tgc 380  Q
    |||    
T  14204937 tgc 14204939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 337
Target Start/End: Complemental strand, 50380030 - 50379972
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 337  Q
    ||||||||| ||||||||||||||||| |||  ||| | ||||||||||| ||||||||    
T  50380030 ggctaaactgcagttttgaccccctaactttcataaaggtgcgattttggtcccctaat 50379972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 335
Target Start/End: Complemental strand, 43706962 - 43706901
Alignment:
Q  274 atcttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 335  Q
    |||||||||||||| || ||||  |||||||| |||   |||||||||||||||||||||||    
T  43706962 atcttggctaaactccactttttgccccctaatttttaaaatgttgcgattttggcccccta 43706901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 2425527 - 2425471
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 335  Q
    ||||||||| || ||||  ||||||| ||||  ||||||||||||||||||||||||    
T  2425527 ggctaaactgcactttttgccccctatgtttcataatgttgcgattttggcccccta 2425471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 28920955 - 28920899
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 335  Q
    ||||||||| || ||||  ||||||||||||   |||||||||||||||||||||||    
T  28920955 ggctaaacttcacttttcgccccctaagtttcaaaatgttgcgattttggcccccta 28920899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 46313332 - 46313276
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 335  Q
    ||||||||| ||||||||||||||||| |||   || | ||||||||||||||||||    
T  46313332 ggctaaactgcagttttgaccccctaactttcacaaaggtgcgattttggcccccta 46313276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 277 - 337
Target Start/End: Original strand, 22417656 - 22417716
Alignment:
Q  277 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 337  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22417656 ttggttaaactacagttttgaccccctaagtttgctaatgttacgattttggccccctaat 22417716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 274 - 380
Target Start/End: Complemental strand, 22419000 - 22418894
Alignment:
Q  274 atcttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcc 373  Q
    |||| ||||||||||| |||||| |||||||||||||  |||||| ||||||| | ||||||||        ||||||||||||||||||||||||||||    
T  22419000 atctaggctaaactacggttttggccccctaagtttgtcaatgttacgatttttgtcccctaataaaaaaaatgaaaattttgccccctaagatttagcc 22418901  T
Q  374 cctttgc 380  Q
    |||||||    
T  22418900 cctttgc 22418894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 335
Target Start/End: Complemental strand, 6978203 - 6978139
Alignment:
Q  271 attatcttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 335  Q
    ||||||||||||||||| ||||||| ||||||||| |||   |||| |||||||||||| |||||    
T  6978203 attatcttggctaaactgcagttttaaccccctaactttcacaatggtgcgattttggctcccta 6978139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 20409067 - 20409123
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 335  Q
    ||||||||| ||||||||||||||||| |||   |||| ||||||||||||||||||    
T  20409067 ggctaaactgcagttttgaccccctaactttcacaatggtgcgattttggcccccta 20409123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 334
Target Start/End: Original strand, 12181595 - 12181650
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccct 334  Q
    ||||||||| ||||||||||| ||||| ||||  ||||||| ||||||||||||||    
T  12181595 ggctaaactgcagttttgacctcctaactttgtaaatgttgggattttggccccct 12181650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 327
Target Start/End: Original strand, 10120173 - 10120223
Alignment:
Q  277 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttg 327  Q
    |||||||||| ||| ||||| |||||||||||||  |||||||||||||||    
T  10120173 ttggctaaacaacaattttggccccctaagtttgtcaatgttgcgattttg 10120223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 335
Target Start/End: Original strand, 15888990 - 15889027
Alignment:
Q  298 ccccctaagtttgctaatgttgcgattttggcccccta 335  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  15888990 ccccctaagtttgcaaatgttgcaattttggcccccta 15889027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 20410275 - 20410219
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 335  Q
    ||||||||| ||||||||||||||||| |||   |||| |||||||||| |||||||    
T  20410275 ggctaaactgcagttttgaccccctaacttttacaatggtgcgattttgacccccta 20410219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 277 - 380
Target Start/End: Complemental strand, 5504196 - 5504093
Alignment:
Q  277 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccct 376  Q
    ||||||||||||||||||||||| | ||||||||| ||||||||||||||| |||||||||        |||| ||||||||||||| | ||||||||||    
T  5504196 ttggctaaactacagttttgacctcttaagtttgccaatgttgcgattttgaccccctaataaaaaaaatgaatattttgccccctatgttttagcccct 5504097  T
Q  377 ttgc 380  Q
    ||||    
T  5504096 ttgc 5504093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 337
Target Start/End: Complemental strand, 124587 - 124529
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 337  Q
    ||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  124587 ggctaaactacagttttgacctcttaagtttgccaatgttgcgattttggccccctaat 124529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 279 - 332
Target Start/End: Original strand, 3597323 - 3597376
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccc 332  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  3597323 ggctaaactacagttttggccccctaagtttactaatgttgcgattttggcccc 3597376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 279 - 380
Target Start/End: Original strand, 5502918 - 5503018
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 378  Q
    ||||||||||||||||||||||  ||||||||| |||||||| ||||||||||||||||        |||| ||||||||||||| | |||| |||||||    
T  5502918 ggctaaactacagttttgaccct-taagtttgccaatgttgcaattttggccccctaataaaaaaaatgaatattttgccccctatgttttaaccccttt 5503016  T
Q  379 gc 380  Q
    ||    
T  5503017 gc 5503018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 335
Target Start/End: Complemental strand, 3598982 - 3598924
Alignment:
Q  277 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 335  Q
    ||||||||||||||||||||  ||||||| ||| | |||||||||||||||||||||||    
T  3598982 ttggctaaactacagttttggtcccctaaatttaccaatgttgcgattttggcccccta 3598924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 380
Target Start/End: Original strand, 121349 - 121450
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 378  Q
    |||||||||||||||||||| | |||| ||||| |||||||| |||||| |||||||||        |||| |||||||||||||   ||||||||||||    
T  121349 ggctaaactacagttttgacactctaaatttgccaatgttgcaattttgaccccctaataaaaaaaatgaatattttgccccctatattttagccccttt 121448  T
Q  379 gc 380  Q
    ||    
T  121449 gc 121450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 337
Target Start/End: Original strand, 14189663 - 14189722
Alignment:
Q  278 tggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 337  Q
    |||||||||| ||||||||||||||||| |||  ||| | ||||||||||| ||||||||    
T  14189663 tggctaaactgcagttttgaccccctaactttcataaaggtgcgattttggtcccctaat 14189722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 337
Target Start/End: Complemental strand, 14190545 - 14190487
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 337  Q
    ||||||||| ||||||||||||||||| |||  ||| | ||||||||||| ||||||||    
T  14190545 ggctaaactgcagttttgaccccctaactttcataaaggtgcgattttggtcccctaat 14190487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 335
Target Start/End: Original strand, 17414542 - 17414600
Alignment:
Q  277 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 335  Q
    ||||||||||| |||||||||||| |||| |||   |||| ||||||||||||||||||    
T  17414542 ttggctaaactgcagttttgaccctctaacttttacaatggtgcgattttggcccccta 17414600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 331
Target Start/End: Complemental strand, 17415749 - 17415695
Alignment:
Q  277 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccc 331  Q
    ||||||||||| ||||||||||||||||| |||   |||| ||||||||||||||    
T  17415749 ttggctaaactgcagttttgaccccctaactttcacaatggtgcgattttggccc 17415695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 8061856 - 8061912
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 335  Q
    ||||||||| ||||||| ||||||||| |||   |||| ||||||||||||||||||    
T  8061856 ggctaaactgcagttttaaccccctaactttcagaatggtgcgattttggcccccta 8061912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 380
Target Start/End: Original strand, 13882655 - 13882756
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 378  Q
    |||||||||||| |||||| | ||||||||||| |||||||  |||||| |||||||||        |||| ||||||||||||| | ||||||||||||    
T  13882655 ggctaaactacaattttgatctcctaagtttgccaatgttgtaattttgaccccctaataaaaaaaatgaatattttgccccctatgttttagccccttt 13882754  T
Q  379 gc 380  Q
    ||    
T  13882755 gc 13882756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 279 - 327
Target Start/End: Complemental strand, 13883926 - 13883878
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttg 327  Q
    ||||||||||||||||||||||| ||||||||  |||||||||||||||    
T  13883926 ggctaaactacagttttgaccccttaagtttgtcaatgttgcgattttg 13883878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 38612219 - 38612275
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 335  Q
    ||||||||| ||||||||||||||||| |||   |||||||||||||||||||||||    
T  38612219 ggctaaactgcagttttgaccccctaactttcacaatgttgcgattttggcccccta 38612275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 38613475 - 38613419
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 335  Q
    ||||||||| ||||||||||||||||| |||   |||||||||||||||||||||||    
T  38613475 ggctaaactgcagttttgaccccctaactttcacaatgttgcgattttggcccccta 38613419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1875 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1875
Description:

Target: scaffold1875; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 756 - 812
Alignment:
Q  279 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 335  Q
    ||||||||| || |||| ||||| |||||||   |||||||||||||||||||||||    
T  756 ggctaaactgcacttttcaccccttaagtttcgaaatgttgcgattttggcccccta 812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University