View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20314_low_18 (Length: 386)
Name: NF20314_low_18
Description: NF20314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20314_low_18 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 232 - 386
Target Start/End: Complemental strand, 35678454 - 35678300
Alignment:
| Q |
232 |
tgaagactattcctttgattctaatgggttgtggaggagttggttctcaccttctccaacacattgtctcatcccgttctctccactcttcacaggtaat |
331 |
Q |
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| T |
35678454 |
tgaagactattcctttgattctaatgggttgtggaggagttggttctcaccttctccaacacattgtctcatcccgttctctccactcttcacaggtaat |
35678355 |
T |
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| Q |
332 |
cgattctcatgtttctcattctgttttaatttccttgtatatcttcattcttctc |
386 |
Q |
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| T |
35678354 |
cgattctcatgtttctcattctgttttaatttccttgtatatcttcattcttctc |
35678300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 41 - 186
Target Start/End: Complemental strand, 35678621 - 35678477
Alignment:
| Q |
41 |
tattattatgcttatatcaaaattctcatttcacattcacacagacacagactacagttcccttactactttacatacattcccacgaactgcttcttcc |
140 |
Q |
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| T |
35678621 |
tattattatgcttatatcaaaattctcatttcacattcacacagacacagactatagttcccttactactt-acatacattcccacgaactgcttcttcc |
35678523 |
T |
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| Q |
141 |
attattccatttcataaaatccataaaattcaatttgcaactctaa |
186 |
Q |
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| T |
35678522 |
attattccatttcataaaatccataaaattcaatttgcaactctaa |
35678477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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