View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20314_low_2 (Length: 564)
Name: NF20314_low_2
Description: NF20314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20314_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 11 - 443
Target Start/End: Original strand, 46538249 - 46538682
Alignment:
| Q |
11 |
tgagatgaagggagcatctattaatggtatatggtttatttattattgtgtttgttgtacttgtatgtatggtttgaagtttatgctacttcatcactgt |
110 |
Q |
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| T |
46538249 |
tgagatggagggagcatctattaatggtatatggtttatttattattgtgtttgttgtacttgtatgtatggtttgaagtttatgctacttcatcactgt |
46538348 |
T |
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| Q |
111 |
ttgaacataagtgtattgatgagttacattcttgattttcctttgtttggatttttgtactgttacctattggaccggattggatagtatttttatatag |
210 |
Q |
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| T |
46538349 |
ttgaacataagtgtattgatgagttacattcttgattttcctttgtttggatttttgtactgttacctattggactggattggatagtatttttatatag |
46538448 |
T |
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| Q |
211 |
atctgttgtctctttgttgatcactatctcattcactattttccattaaatgtgcacatgtcattccaattagaggcgttttcatcctctgcagatggca |
310 |
Q |
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| T |
46538449 |
atctgttgtctctttgttgatcactatctcattcactattttccattaaatgtgcacatgtcattccaattagaggcgttttcatcctctgcagatgcca |
46538548 |
T |
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| Q |
311 |
atgtttgtcgacgcagctcagtagtgtgatttaatgtgtcaacaaag-nnnnnnncacagatatcactttgtgttttattgcccttgtgatcgtcatggt |
409 |
Q |
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| T |
46538549 |
atgtttgtcgacgcagctcagtagtgtgatttaatgtgtcaacaaagaaaaaaaacacagatatcactttgtgttttattgcccttgtgatcgtcatggt |
46538648 |
T |
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| Q |
410 |
ttataattattcaacttaactcatttctcgtttt |
443 |
Q |
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| T |
46538649 |
ttataattattgaactcaactcatttctcgtttt |
46538682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 464 - 548
Target Start/End: Original strand, 46538680 - 46538764
Alignment:
| Q |
464 |
tttggacccccctcctaatacctcaacatttattcaagtattccacccttattttttctctatctctcttccctatcacatttat |
548 |
Q |
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| T |
46538680 |
tttggacccccctcctaatacctcaacatttattcaagtattccacccttattttttctctatctctcttccctatcacatttat |
46538764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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