View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20314_low_22 (Length: 335)
Name: NF20314_low_22
Description: NF20314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20314_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 12 - 315
Target Start/End: Complemental strand, 38103592 - 38103275
Alignment:
| Q |
12 |
actgtaaaaataaaattgtaacatctatattttttaataaaaaa--------------ctgcattggtttgtttagttacaaaatagtagagtaaaacaa |
97 |
Q |
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| T |
38103592 |
actgtaaaaataaaattgtaacatctatattttttaataaaaaaataaaaataaaaaactgcattggtttgtttagttacaaaatagtagagtaaaacaa |
38103493 |
T |
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| Q |
98 |
caaattcatctctggctttgtaggacgttgtcgattaaatcaacttagatcataaatattttaaaaagattgtgactctgtcaaattttactcattttag |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38103492 |
caaattcatctctggctttgtaggacgttgtcgattaaatcaacttagatcataaatattttaaaaagattgtgactctgtcaaattttactcattttag |
38103393 |
T |
|
| Q |
198 |
ttgttattggagtcaaggagggactaaaatgatgataagtggttaaatataaggatcataaagacaaacttaacagtttaatagagtgatagacattttt |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38103392 |
ttgttattggagtcaaggagggactaaaatgatgataagtggttaaatataaggatcataaagacaaacttaacagtttaatagagtgatagacattttt |
38103293 |
T |
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| Q |
298 |
gagatattcataatctga |
315 |
Q |
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|||||||||||||||||| |
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| T |
38103292 |
gagatattcataatctga |
38103275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 1315128 - 1315087
Alignment:
| Q |
214 |
ggagggactaaaatgatgataagtggttaaatataaggatca |
255 |
Q |
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| T |
1315128 |
ggagggactaaattgatattaagtggttaaatataaggatca |
1315087 |
T |
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