View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20314_low_27 (Length: 315)
Name: NF20314_low_27
Description: NF20314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20314_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 19332965 - 19332664
Alignment:
| Q |
1 |
ttgctctgtcatcatttgaacctgttttgataatgacaaaggaaattgctatgaataccgcacagatttggcaaaattaaatttcaaatttgtcatttaa |
100 |
Q |
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| T |
19332965 |
ttgctctgtcatcatttgaacctgttttgataatgacaaaggaaattgctatgaataccgcacagatttggcaaaattaaatttcaaatttgtcatttaa |
19332866 |
T |
|
| Q |
101 |
aattaacaaagtaatacaaattgaattttattatgttgttaaccctcagatttatagagaaaatggacacaaggtaccctgactttaaatttggttttct |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19332865 |
aattaacaaagtaatacaaattaaattttattatgttgttaaccctcagatttatagagaaaatggacacaaggtaccctgactttaaatttggttttct |
19332766 |
T |
|
| Q |
201 |
tgaaggattcgttttaaagagaagtcattaaccacttaag-----acttagttaatacaaattgaatatggtatgaatttgaagtaaatatgattgtgct |
295 |
Q |
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||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19332765 |
tgaaggattcgttttaaagagaaatcattaaccacttaagtctgatcttagttaatacaaattgaatatggtatgaatttgaagtaaatatgattgtgct |
19332666 |
T |
|
| Q |
296 |
ag |
297 |
Q |
| |
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|| |
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| T |
19332665 |
ag |
19332664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 10 - 234
Target Start/End: Complemental strand, 19374531 - 19374309
Alignment:
| Q |
10 |
catcatttgaacctgttttgataatgacaaaggaaattgctatgaataccgcacagatttggcaaaattaaatttcaaatttgtcatttaaaattaacaa |
109 |
Q |
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|||||||||||||| |||||||| ||| ||||||||||||||||||||||||| | ||||||||||| |||||| ||| |||||||| |||||||||||| |
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| T |
19374531 |
catcatttgaacct-ttttgata-tgagaaaggaaattgctatgaataccgcatatatttggcaaaactaaattccaattttgtcatgtaaaattaacaa |
19374434 |
T |
|
| Q |
110 |
agtaatacaaattgaattttattatgttgttaaccctcagatttatagagaaaatggacacaaggtaccctgactttaaatttggttttcttgaaggatt |
209 |
Q |
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||||||||||||| || ||| || ||| |||||||||| |||||||| ||||||||||||||| || || ||||||||| ||||||||| | ||||||| |
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| T |
19374433 |
agtaatacaaatttaaatttgttttgtagttaaccctctgatttataaggaaaatggacacaagttatccggactttaaacttggttttcctaaaggatt |
19374334 |
T |
|
| Q |
210 |
cgttttaaagagaagtcattaacca |
234 |
Q |
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|||||| ||||| |||||||||| |
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| T |
19374333 |
tgttttacagagagctcattaacca |
19374309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 6 - 131
Target Start/End: Complemental strand, 18102284 - 18102161
Alignment:
| Q |
6 |
ctgtcatcatttgaacctgttttgataatgacaaaggaaattgctatgaataccgcacagatttggcaaaattaaatttcaaatttgtcatttaaaatta |
105 |
Q |
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|||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||| |
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| T |
18102284 |
ctgtcatcatttcaacct-ttttgata-tgacaaaggaaattgctatgaataccgcacagatttggcaaaattaaattccaactttgtgatttaaaatta |
18102187 |
T |
|
| Q |
106 |
acaaagtaatacaaattgaattttat |
131 |
Q |
| |
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|||||||||||||||||||| ||||| |
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| T |
18102186 |
acaaagtaatacaaattgaaatttat |
18102161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 194
Target Start/End: Complemental strand, 19398560 - 19398394
Alignment:
| Q |
6 |
ctgtcatcatttgaacctgttttgataatgacaaaggaaattgctatgaataccgcacagatttggcaaaattaaatttcaaatttgtcatttaaaatta |
105 |
Q |
| |
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|||||||||||||||||| |||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
19398560 |
ctgtcatcatttgaacct-ttttgata-tgacagaggaaattgctatgaataccacacagatttggcaaaattaaa--------------------atta |
19398483 |
T |
|
| Q |
106 |
acaaagtaatacaaattgaattttattatgttgttaaccctcagatttatagagaaaatggacacaaggtaccctgactttaaatttgg |
194 |
Q |
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|||||||||||||||||||| ||| || |||||||||||||| ||||||| |||||||||||||| ||||| |||||||||||||| |
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| T |
19398482 |
acaaagtaatacaaattgaaatttgttttgttgttaaccctcttatttataagaaaaatggacacaagttacccggactttaaatttgg |
19398394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 19337357 - 19337315
Alignment:
| Q |
41 |
ggaaattgctatgaataccgcacagatttggcaaaattaaatt |
83 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19337357 |
ggaaattgctatgaataccgcacagatttggcaaaattaaatt |
19337315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 19337467 - 19337431
Alignment:
| Q |
46 |
ttgctatgaataccgcacagatttggcaaaattaaat |
82 |
Q |
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|||||||||||| |||||||||||||||||||||||| |
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| T |
19337467 |
ttgctatgaatatcgcacagatttggcaaaattaaat |
19337431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 26626784 - 26626839
Alignment:
| Q |
78 |
taaatttcaaatttgtcatttaaaa-ttaacaaagtaatacaaattgaattttatt |
132 |
Q |
| |
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|||||||||| ||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
26626784 |
taaatttcaaccttgtcttttaaaaattaacaaagtaatacaaattgaattttatt |
26626839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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