View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20314_low_3 (Length: 513)
Name: NF20314_low_3
Description: NF20314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20314_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 37 - 494
Target Start/End: Complemental strand, 12889089 - 12888629
Alignment:
| Q |
37 |
ttaattatggttcagtttatttcattttatgaattcnnnnnnnnnttcctagagcgtcgcgtatcgacctccc-gatgataaggttttatgtagatgtgg |
135 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
12889089 |
ttaattatggttcagttcatttcattttatgaattcaaaaattt-ttcctagagcgttgcgtatcgacctccccgatgataaggttttatgtagatgggg |
12888991 |
T |
|
| Q |
136 |
aatcaaccacccttaatttggtttgtatgaaattagacccaagatcgaaattgaaagtcattggtgtatcaatgtaacctactagctcgatgttttcacc |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
12888990 |
aatcaaccacccttaatttggtttgtatgaaattagacccaagatcgaaattgaaagtcattggtgtatcaatgta-cctactacctcgatgttttcacc |
12888892 |
T |
|
| Q |
236 |
taagaaacttattaggacacttcgatatggtaacaaa----gttgagtctggcagtcctagttacttataggcatcgctgaaaatgacgtatgctgaact |
331 |
Q |
| |
|
||| |||||||||||||||| |||||||||||||||| |||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12888891 |
taaaaaacttattaggacacctcgatatggtaacaaattaagttgagactggtagtcctagttacttataggcgtcgctgaaaatgacgtatgctgaact |
12888792 |
T |
|
| Q |
332 |
ttctttatcgattagactcctccttgagacgaccatcaggatgtcctataaccggtctattcccatgtaatatttattcaaagaatgtactcgaggggtg |
431 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12888791 |
ttctttatcgatcagactcctccttgagacgaccatcaggatgtcctataaccggtctattcccatgtaatatttattcaaagaatgtactcgaggggat |
12888692 |
T |
|
| Q |
432 |
gttattattgacccgcgtaacacaaacaaatgttgcagctcgaacatacttctttctcgcgat |
494 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
12888691 |
gttattattgacatgcgtaacacaaacaaattttgcagctcgaacatacttatttctcgcgat |
12888629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 373 - 497
Target Start/End: Original strand, 9938860 - 9938983
Alignment:
| Q |
373 |
tgtcctataaccggtctattcccatgtaatatttattcaaagaatgtactcgaggggtggttattattgacccgcgtaacacaaacaaatgttgcagctc |
472 |
Q |
| |
|
|||||| |||| |||||||||||||||||| ||||||| || |||||| | |||||| || |||| ||| | ||||| |||||||||| ||||||||| |
|
|
| T |
9938860 |
tgtcctctaactggtctattcccatgtaatctttattcgaaaaatgtaattgaggggaggatatttttggactgcgtattacaaacaaat-ttgcagctc |
9938958 |
T |
|
| Q |
473 |
gaacatacttctttctcgcgatatt |
497 |
Q |
| |
|
|||||| ||||||||| ||||||| |
|
|
| T |
9938959 |
aaacatatttctttctcccgatatt |
9938983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 324
Target Start/End: Original strand, 9938771 - 9938834
Alignment:
| Q |
260 |
atatggtaacaaagttgagtctggcagtcctagttacttataggcatcgctgaaaatgacgtatg |
324 |
Q |
| |
|
|||||||||||||||||||||||| | | ||||| ||||||||| | ||||||||||| ||||| |
|
|
| T |
9938771 |
atatggtaacaaagttgagtctggatgccttagttgcttataggcgt-gctgaaaatgatgtatg |
9938834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University