View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20314_low_30 (Length: 252)
Name: NF20314_low_30
Description: NF20314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20314_low_30 |
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| [»] scaffold0176 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 21 - 246
Target Start/End: Original strand, 34155385 - 34155610
Alignment:
| Q |
21 |
aacccatctaagagactttttgagtaaaggagaaaaagactcaaagcaggtaatatctcatgcataaaaagtggcacaaaattagtgagataaactaatt |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34155385 |
aacccatctaagagactttttgagtaaaggagaaaaagactcaaagcaggtaatatctcatacataaaaagtggcacaaaattagtgagataaactaatt |
34155484 |
T |
|
| Q |
121 |
tgcaaaggaaatgtaagaaacatatctctaattcggtcaccaaaattagtgttggtgagttaattgctgaagannnnnnnnaataagtgacaatcaatat |
220 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
34155485 |
tacaaaggaaatgtaagaaacatatctctaattcggtcaccaaaattagtgttggtgagttaattactgaagattttttttaataagtgacaatcaatat |
34155584 |
T |
|
| Q |
221 |
atacctctattatccacaggttctgc |
246 |
Q |
| |
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|||||||||||||||||| ||||||| |
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| T |
34155585 |
atacctctattatccacaagttctgc |
34155610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 21 - 246
Target Start/End: Complemental strand, 34168520 - 34168295
Alignment:
| Q |
21 |
aacccatctaagagactttttgagtaaaggagaaaaagactcaaagcaggtaatatctcatgcataaaaagtggcacaaaattagtgagataaactaatt |
120 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34168520 |
aacccatctaagagactttttgagtaaaggagaaaaagactcaaagcaggtaatatctcatacataaaaagtggcacaaaattagtgagataaactaatt |
34168421 |
T |
|
| Q |
121 |
tgcaaaggaaatgtaagaaacatatctctaattcggtcaccaaaattagtgttggtgagttaattgctgaagannnnnnnnaataagtgacaatcaatat |
220 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
34168420 |
tacaaaggaaatgtaagaaacatatctctaattcggtcaccaaaattagtgttggtgagttaattactgaagattttttttaataagtgacaatcaatat |
34168321 |
T |
|
| Q |
221 |
atacctctattatccacaggttctgc |
246 |
Q |
| |
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|||||||||||||||||| ||||||| |
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| T |
34168320 |
atacctctattatccacaagttctgc |
34168295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 21 - 246
Target Start/End: Complemental strand, 34208730 - 34208504
Alignment:
| Q |
21 |
aacccatctaagagactttttgagtaaaggagaaaaagactcaaagcaggtaatatctcatgcataaaaagtggcacaaaattagtgagataaactaatt |
120 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34208730 |
aacccatcaaagagactttttgagtaaaggagaaaaagactcaaagcaggtaatatctcatacataaaaagtggcacaaaattagtgagataaactaatt |
34208631 |
T |
|
| Q |
121 |
tgcaaaggaaatgtaagaaacatatctctaattcggtcaccaaaattagtgttggtgagttaattgctgaaga-nnnnnnnnaataagtgacaatcaata |
219 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
34208630 |
tacaaaggaaatgtaagaaacatatctctaattcggtcaccaaaattagtgttggtgagttaattactgaagatttttttttaataagtgacaatcaata |
34208531 |
T |
|
| Q |
220 |
tatacctctattatccacaggttctgc |
246 |
Q |
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||||||||||||||||||| ||||||| |
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| T |
34208530 |
tatacctctattatccacaagttctgc |
34208504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 21 - 246
Target Start/End: Complemental strand, 28842 - 28617
Alignment:
| Q |
21 |
aacccatctaagagactttttgagtaaaggagaaaaagactcaaagcaggtaatatctcatgcataaaaagtggcacaaaattagtgagataaactaatt |
120 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28842 |
aacccatctaagagactttttnantaaaggagaaaaagactcaaagcaggtaatatctcatacataaaaagtggcacaaaattagtgagataaactaatt |
28743 |
T |
|
| Q |
121 |
tgcaaaggaaatgtaagaaacatatctctaattcggtcaccaaaattagtgttggtgagttaattgctgaagannnnnnnnaataagtgacaatcaatat |
220 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
28742 |
tacaaaggaaatgtaagaaacatatctctaattcggtcaccaaaattagtgttggtgagttaattactgaagattttttttaataagtgacaatcaatat |
28643 |
T |
|
| Q |
221 |
atacctctattatccacaggttctgc |
246 |
Q |
| |
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|||||||||||||||||| ||||||| |
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| T |
28642 |
atacctctattatccacaagttctgc |
28617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 45 - 246
Target Start/End: Complemental strand, 35319 - 35118
Alignment:
| Q |
45 |
taaaggagaaaaagactcaaagcaggtaatatctcatgcataaaaagtggcacaaaattagtgagataaactaatttgcaaaggaaatgtaagaaacata |
144 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35319 |
taaaggagaaaaagactcaaagcaggtaatatctcatacataaaaagtggcacaaaattagtgagataaactaatttacaaaggaaatgtaagaaacata |
35220 |
T |
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| Q |
145 |
tctctaattcggtcaccaaaattagtgttggtgagttaattgctgaagannnnnnnnaataagtgacaatcaatatatacctctattatccacaggttct |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35219 |
tctctaattcggtcaccaaaattagtgttggtgagttaattactgaagattttttttaataagtgacaatcaatatatacctctattatccacaagttct |
35120 |
T |
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| Q |
245 |
gc |
246 |
Q |
| |
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|| |
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|
| T |
35119 |
gc |
35118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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