View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20314_low_4 (Length: 502)
Name: NF20314_low_4
Description: NF20314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20314_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 8 - 483
Target Start/End: Original strand, 52860326 - 52860801
Alignment:
| Q |
8 |
agcagcacagatcaactcatctcattccgaaatccaagccttaacaatcttcaaactaaaccttcttgacccactcaatgccttaacaacttgggatcca |
107 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52860326 |
agcaacacaaatcaactcatctcattccgaaatccaagccttaacaatcttcaaactaaaccttcttgacccactcaatgccttaacaacttgggatcca |
52860425 |
T |
|
| Q |
108 |
tcaacaccttcagcaccatgtgattggcatggcattctctgttacaacaacaataacagagttcacactatacgtttacctcgtcttcaactcactggtt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52860426 |
tcaacaccttcagcaccatgtgattggcatggcattctctgttacaacaacaataacagagttcacactatacgtttacctcgtcttcaactcactggtt |
52860525 |
T |
|
| Q |
208 |
caatatcttcatcactctctaatctctcacagcttcgtaaacttagtctccattccaacaaccttaactcatcaataccttcttctctttctcattgtct |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52860526 |
caatatcttcatcactctctaatctctcacagcttcgtaaacttagtctccattccaacaaccttaactcatcaataccttcttctctttctcattgtct |
52860625 |
T |
|
| Q |
308 |
cttcctacgtgctgtttatcttcacaacaactctctctctggttatctcccttcttcacttctcaccctcaccaaccttcaaattctcaaccttgctcgt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
52860626 |
cttcctacgtgctgtttatcttcacaacaactctctctctggttatctccctccttcacttctcaccctcaccaatcttcaaattctcaaccttgctcgt |
52860725 |
T |
|
| Q |
408 |
aactttctctctggtacaataccaaataatctctctaactccctaaggtttcttgatctttcttctaactcattct |
483 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52860726 |
aactttctctctggtacaataccaaataatctctctaactccctaaggtttcttgatctttcttctaactcattct |
52860801 |
T |
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