View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20314_low_6 (Length: 473)
Name: NF20314_low_6
Description: NF20314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20314_low_6 |
 | |
|
| [»] scaffold0515 (2 HSPs) |
| | |
|
| [»] scaffold0317 (2 HSPs) |
| | |
|
| [»] scaffold0306 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0515 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: scaffold0515
Description:
Target: scaffold0515; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 214 - 464
Target Start/End: Original strand, 125 - 375
Alignment:
| Q |
214 |
cttcacttaagatggattttctgctcctattcaatgtctcgacagctgctggactgttttgaggtttgattttaagtttgatttcattttcatgttgcaa |
313 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
125 |
cttcgcttaagatggattttctgctcctattcaatgtctggacagctgctggactgttttgaggtttgattttaagtttgatttcattttcatgttgcaa |
224 |
T |
|
| Q |
314 |
aactgtaatgactaaaaagaatcatccactttgaaattttcagttactttagattcagtattcttcatacaattgtcttgatcaatcgtaatgtatttaa |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
225 |
aactgtaatgactaaaaagaatcatccactttgaaattttcagttactttagattcaatattcttcatacaattgtcttgatcaatcgtaatgtatttaa |
324 |
T |
|
| Q |
414 |
atttgtgatatagagaactattcatatatattttatgactttgagtataat |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
325 |
atttgtgatatagagaactattcatatatattttatgactttgagtataat |
375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0515; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 1 - 62
Alignment:
| Q |
146 |
gtctgaggacgggaagccatgatgtcctctgaatcatcttcctctccataaatataaatggg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1 |
gtctgaggacgggaagccatgatgtcctctgaatcgtcttcctctccataaatataaatggg |
62 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0317 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: scaffold0317
Description:
Target: scaffold0317; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 214 - 464
Target Start/End: Complemental strand, 19082 - 18832
Alignment:
| Q |
214 |
cttcacttaagatggattttctgctcctattcaatgtctcgacagctgctggactgttttgaggtttgattttaagtttgatttcattttcatgttgcaa |
313 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19082 |
cttcgcttaagatggattttctgctcctattcaatgtctggacagctgctggactgttttgaggtttgattttaagtttgatttcattttcatgttgcaa |
18983 |
T |
|
| Q |
314 |
aactgtaatgactaaaaagaatcatccactttgaaattttcagttactttagattcagtattcttcatacaattgtcttgatcaatcgtaatgtatttaa |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18982 |
aactgtaatgactaaaaagaatcatccactttgaaattttcagttactttagattcaatattcttcatacaattgtcttgatcaatcgtaatgtatttaa |
18883 |
T |
|
| Q |
414 |
atttgtgatatagagaactattcatatatattttatgactttgagtataat |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18882 |
atttgtgatatagagaactattcatatatattttatgactttgagtataat |
18832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0317; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 19345 - 19145
Alignment:
| Q |
20 |
ttggagaggagagtgaggctgacagaacaaatatgaatgcgaaagagggtgagcaccgcggtgacggtgagatgagatggtgatagatgacgttaatggt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19345 |
ttggagaggagagtgaggctgacagaacaaatatgaatgcgaaagagggtgagcacggcggtgacggtgagatgagatggtgatagatgacgttaatggt |
19246 |
T |
|
| Q |
120 |
gttca-------------gatggtaatgacgacggtgaggtctgaggacgggaagccatgatgtcctctgaatcatcttcctctccataaatataaatgg |
206 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
19245 |
gttcagatttgaggtgaggatggtaatgacggcggtgaggtctgaggacgggaagccatgatgtcctctgaatcgtcttcctctccataaatataaatgg |
19146 |
T |
|
| Q |
207 |
g |
207 |
Q |
| |
|
| |
|
|
| T |
19145 |
g |
19145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0306 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: scaffold0306
Description:
Target: scaffold0306; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 214 - 464
Target Start/End: Original strand, 127 - 377
Alignment:
| Q |
214 |
cttcacttaagatggattttctgctcctattcaatgtctcgacagctgctggactgttttgaggtttgattttaagtttgatttcattttcatgttgcaa |
313 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
127 |
cttcgcttaagatggattttctgctcctattcaatgtctggacagctgctggactgttttgaggtttgattttaagtttgatttcattttcatgttgcaa |
226 |
T |
|
| Q |
314 |
aactgtaatgactaaaaagaatcatccactttgaaattttcagttactttagattcagtattcttcatacaattgtcttgatcaatcgtaatgtatttaa |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
227 |
aactgtaatgactaaaaagaatcatccactttgaaattttcagttactttagattcaatattcttcatacaattgtcttgatcaatcgtaatgtatttaa |
326 |
T |
|
| Q |
414 |
atttgtgatatagagaactattcatatatattttatgactttgagtataat |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
327 |
atttgtgatatagagaactattcatatatattttatgactttgagtataat |
377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0306; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 1 - 64
Alignment:
| Q |
144 |
aggtctgaggacgggaagccatgatgtcctctgaatcatcttcctctccataaatataaatggg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1 |
aggtctgaggacgggaagccatgatgtcctctgaatcgtcttcctctccataaatataaatggg |
64 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 39481097 - 39481211
Alignment:
| Q |
20 |
ttggagaggagagtgaggctgacagaacaaatatgaatgcgaaagagggtgagcaccgcggtg------------acggtgagatgagatggtgatagat |
107 |
Q |
| |
|
||||||| ||||||||||| || ||||||||||||||||||| |||||||| | || |||||| ||||||||||||||||||||||||| |
|
|
| T |
39481097 |
ttggagaagagagtgaggcagagagaacaaatatgaatgcgagagagggtgcggacggcggtggcggtggtggtgacggtgagatgagatggtgatagat |
39481196 |
T |
|
| Q |
108 |
gacgttaatggtgtt |
122 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
39481197 |
gacgttaatagtgtt |
39481211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 21156902 - 21156854
Alignment:
| Q |
79 |
ggtgacggtgagatgagatggtgatagatgacgttaatggtgttcagat |
127 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
21156902 |
ggtgacggtgagatgatatggtgatagatgacgttaatggcgttcagat |
21156854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 4117597 - 4117549
Alignment:
| Q |
79 |
ggtgacggtgagatgagatggtgatagatgacgttaatggtgttcagat |
127 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
4117597 |
ggtgacggtgagatgatatggtgatagatgacgttaatggcgttcagat |
4117549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 47933936 - 47933984
Alignment:
| Q |
79 |
ggtgacggtgagatgagatggtgatagatgacgttaatggtgttcagat |
127 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
47933936 |
ggtgacggtgagatgagatggtaatagacgacgttaatggtgttcagat |
47933984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 30849830 - 30849786
Alignment:
| Q |
79 |
ggtgacggtgagatgagatggtgatagatgacgttaatggtgttc |
123 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
30849830 |
ggtgacggtgagatgagatggtaatagatgatgttaatggtgttc |
30849786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University