View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20315_high_1 (Length: 706)
Name: NF20315_high_1
Description: NF20315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20315_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 581 - 685
Target Start/End: Complemental strand, 705825 - 705721
Alignment:
| Q |
581 |
cattaccaaatatcaaagtgttacaaacttcccaaataatgatatacctcagaaattcaacagaggtgcaattctttgcaatgtgtttaacccactcatc |
680 |
Q |
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| T |
705825 |
cattaccaaatatcaaagtgttataaacttctccaataatgatatacctcagaaattcaacagaggtgcatctctgtgaaatcgttttaaccccctcatc |
705726 |
T |
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| Q |
681 |
agtca |
685 |
Q |
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||||| |
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| T |
705725 |
agtca |
705721 |
T |
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Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 19565129 - 19565049
Alignment:
| Q |
54 |
ttcatctgtgaaagagaggcatttatct----tatatgttgagttaatcaaatctcgggttaagacaacacaaacttagatatg |
133 |
Q |
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| T |
19565129 |
ttcatctgtgaaagagaggcatttatctatcttatatgttga---aatcaaatctcgggttaagacaacaagaacttagatatg |
19565049 |
T |
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Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 597 - 685
Target Start/End: Original strand, 23692870 - 23692958
Alignment:
| Q |
597 |
agtgttacaaacttcccaaataatgatatacctcagaaattcaacagaggtgcaattctttgcaatgtgtttaacccactcatcagtca |
685 |
Q |
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| T |
23692870 |
agtgttataaacttctcatataatgatatatctcagaaattcaccagaggtgcaactctttgcaatggctataaccccttcatcagtca |
23692958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 572 - 685
Target Start/End: Original strand, 23745719 - 23745832
Alignment:
| Q |
572 |
tgcaccattcattaccaaatatcaaagtgttacaaacttcccaaataatgatatacctcagaaattcaacagaggtgcaattctttgcaatgtgtttaac |
671 |
Q |
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| T |
23745719 |
tgcaccatccagtaccaaatgtccaagtgctgtaaacttctcagattataacatacctcagaaattcaagagaggtgcaactctgtgcaatggctataac |
23745818 |
T |
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| Q |
672 |
ccactcatcagtca |
685 |
Q |
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| T |
23745819 |
cccctcatcagtca |
23745832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 471 - 560
Target Start/End: Original strand, 23746854 - 23746945
Alignment:
| Q |
471 |
tatcctaacaatgtaccgaaaagaggaatcattcgcc-ccaatgttta-ttttatcatcttaatagactgattggaatcttgatatgaaata |
560 |
Q |
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| T |
23746854 |
tatcctaacaatgtaccagaaagaggtataattcacctccaatgtttccttttatcatcttaatagtctgtttggaatctcaatatgaaata |
23746945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 348 - 409
Target Start/End: Complemental strand, 16331034 - 16330973
Alignment:
| Q |
348 |
gacagatgtggttatatttaatcatttttattttcataaattatttctagtgtctacgtgtc |
409 |
Q |
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| T |
16331034 |
gacacatgtggttacatttaatcattttcattttcttaaattattactagtgtctacatgtc |
16330973 |
T |
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