View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20315_high_14 (Length: 310)
Name: NF20315_high_14
Description: NF20315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20315_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 39527656 - 39527943
Alignment:
| Q |
1 |
tatcgttgtaacattcttatcactatgacaccgagacatctttctttttggctctttacaactcaatattcagtcccacacaacattgtgatttgtaagt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
39527656 |
tatcgttgtaacattcttatcactatgacaccgagacatctttctttttggctctttacaactcaatattcagtcccacacaacattgtaatttgta-gt |
39527754 |
T |
|
| Q |
101 |
ttatggctacaccgtaaaatctttgtttaagcttaagtggtagtttatatcacacagatctaactcaaattattcctctattttgtccaccctacttgga |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39527755 |
ttatggctacatcgtaaaatctttgtttaagcttaagtggtagtttatatcacagagatctaactcaaattattcctctattttgtccaccctacttgga |
39527854 |
T |
|
| Q |
201 |
tcctatagttgacatctcctatatatcggtcatttagtttgatggagctgtcggaaaagagaatagagagagacatggtttcctcatca |
289 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39527855 |
tcctatagttgacatctcctatatatcagtcatttagtttgagggagctgtcggaaaagagaatagagagagacatggtttcctcatca |
39527943 |
T |
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