View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20315_high_16 (Length: 275)
Name: NF20315_high_16
Description: NF20315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20315_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 31008231 - 31007972
Alignment:
| Q |
11 |
atcaaaaacaataagatcaagatatactgaacaaacataattcatattgcattgaaaaatgacttcatagattgcgtgattcaaacaattcgataaaagt |
110 |
Q |
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| T |
31008231 |
atcaaaaacaataagatcaagatatactgaacaaacataattcatattgcattgaaaaatgacttcatagattgcgtgattcaaacaattcgataaaagt |
31008132 |
T |
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| Q |
111 |
tcatcattcaatcataatctaaagagtttagttacacatgacaatggt-------------taaagataaaagaatgatacatgcaaagatatatagtga |
197 |
Q |
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| T |
31008131 |
tcatcattcaatcataatctaaagagtttagttacacatgataatggtcaataacataatcaaaagataaaagaatgatacatgcaaag----atagtga |
31008036 |
T |
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| Q |
198 |
caccagtcttcaatcttgtttccaatggttgaaaaacgccacttcaggatcactagttcgcatt |
261 |
Q |
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| T |
31008035 |
caccactcttcaatcttgtttccaatggttgaaaaacgccacttcaggatcactagttcgcatt |
31007972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 128
Target Start/End: Complemental strand, 26884192 - 26884078
Alignment:
| Q |
14 |
aaaaacaataagatcaagatatactgaacaaacataattcatattgcattgaaaaatgacttcatagattgcgtgattcaaacaattcgataaaagttca |
113 |
Q |
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| T |
26884192 |
aaaaacattaaaaacaagatttaataaataaacataattcaaattgcattaaaagaagacttcatggattacatggttcgaacaattttatagaggttca |
26884093 |
T |
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| Q |
114 |
tcattcaatcataat |
128 |
Q |
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| T |
26884092 |
tcattcaaccataat |
26884078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 158
Target Start/End: Original strand, 3562493 - 3562538
Alignment:
| Q |
114 |
tcattcaatcataatcta-aagagtttagttacacatgacaatggt |
158 |
Q |
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| T |
3562493 |
tcattcaatcataatctataagagtttagttacacataataatggt |
3562538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 32217026 - 32216937
Alignment:
| Q |
56 |
attgcattgaaaaatgacttcatagattgcgtgattcaaacaattcgataaaagttcatcattcaatcataatctaaagagtttagttac |
145 |
Q |
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| T |
32217026 |
attgcattgataaaggacattatagattacatggttcgaacaataccatagaagttcatcattcaatcctaatttaatgagtttaattac |
32216937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 7674190 - 7674238
Alignment:
| Q |
104 |
taaaagttcatcattcaatcataatcta-aagagtttagttacacatga |
151 |
Q |
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| T |
7674190 |
taaaggttcatcattcaatcctaatctacgagagtttagttacacatga |
7674238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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