View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20315_high_18 (Length: 271)

Name: NF20315_high_18
Description: NF20315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20315_high_18
NF20315_high_18
[»] chr6 (23 HSPs)
chr6 (1-267)||(4507020-4507286)
chr6 (1-265)||(4513732-4513999)
chr6 (32-109)||(4483576-4483653)
chr6 (1-181)||(4558320-4558500)
chr6 (1-181)||(4586827-4587007)
chr6 (141-265)||(4483654-4483768)
chr6 (32-109)||(4496104-4496181)
chr6 (144-238)||(4627288-4627382)
chr6 (2-238)||(4599302-4599537)
chr6 (144-238)||(4298394-4298488)
chr6 (161-241)||(4255552-4255632)
chr6 (101-181)||(4572161-4572241)
chr6 (1-181)||(4581209-4581389)
chr6 (1-60)||(3173319-3173378)
chr6 (1-46)||(4561992-4562037)
chr6 (144-235)||(4259072-4259163)
chr6 (1-48)||(4575783-4575830)
chr6 (144-235)||(4623448-4623539)
chr6 (9-60)||(4503054-4503105)
chr6 (11-50)||(4618627-4618666)
chr6 (11-58)||(4623625-4623672)
chr6 (1-50)||(4488950-4488999)
chr6 (9-50)||(4594336-4594377)
[»] chr8 (1 HSPs)
chr8 (103-265)||(20862659-20862821)
[»] scaffold0288 (1 HSPs)
scaffold0288 (104-231)||(2310-2437)
[»] scaffold0475 (1 HSPs)
scaffold0475 (104-184)||(2013-2093)
[»] scaffold0477 (1 HSPs)
scaffold0477 (144-238)||(3418-3512)
[»] chr7 (1 HSPs)
chr7 (13-61)||(3088060-3088108)


Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 4507286 - 4507020
Alignment:
Q  1 tgagactctaccagatggtttaactccaatggatggtgatggtgatgttaatccagacttgaaatctattcgtgaatcgattagaaataaattcatttac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  4507286 tgagactctaccagatggtttaactccaatggatggtgatggtgatgttaatccagacttgaaatctattcgtgaatcgattagaaagaaatttatttac 4507187  T
Q  101 ccttttcgcgaacttctagctagacttgatgaatctgcaaaatctggtcttgttcctcctgttacttgcttagtttctgattgtctattgtcatttacca 200  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  4507186 ccttttcgcgaacttctagctagacttgatgactctgcgaaatctggtcttgtgcctcctgttacttgcttagtttctgattgtctcttgtcatttacca 4507087  T
Q  201 taaaagttgccgaagaacttgcacttccaattgttctccttgtcccatttagtgcttgttctttcat 267  Q
    ||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4507086 taagagttgctgaagaatttgcacttccaattgttctccttgtcccatttagtgcttgttctttcat 4507020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 4513732 - 4513999
Alignment:
Q  1 tgagactctaccagatggtttaactccaatggatggtgatggtg---atgttaatccagacttgaaatctattcgtgaatcgattagaaataaattcatt 97  Q
    ||||||| | || ||||||||||||||||||||||| |||||||   ||| || || |||||||| |||| |||| ||||| || ||||| || | |||     
T  4513732 tgagactattcctgatggtttaactccaatggatggcgatggtggtgatgctactcaagacttgatatctcttcgcgaatcaatcagaaagaattgcatc 4513831  T
Q  98 tacccttttcgcgaacttctagctagacttgatgaatctgcaaaatctggtcttgttcctcctgttacttgcttagtttctgattgtctattgtcattta 197  Q
     | ||||||||||||||| |||||| |||| |||| ||||||||| | |||||| | |||  ||||||||||||||||||||||||| |  || ||||||    
T  4513832 gaaccttttcgcgaacttttagctaaacttaatgactctgcaaaagccggtcttataccttttgttacttgcttagtttctgattgtattatgccattta 4513931  T
Q  198 ccataaaagttgccgaagaacttgcacttccaattgttctccttgtcccatttagtgcttgttctttc 265  Q
    | | | ||||||| |||||||||||||| ||||| ||  || || |||| |  |||||||||||||||    
T  4513932 ctacacaagttgctgaagaacttgcactcccaatagtgatctttttcccgtcaagtgcttgttctttc 4513999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 4483576 - 4483653
Alignment:
Q  32 gatggtgatggtgatgttaatccagacttgaaatctattcgtgaatcgattagaaataaattcatttacccttttcgc 109  Q
    ||||||||||||||| |||||||||||||| |||||  ||||||||||||||||||||||||||||||| ||||||||    
T  4483576 gatggtgatggtgatattaatccagacttgcaatctcgtcgtgaatcgattagaaataaattcatttacacttttcgc 4483653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 4558500 - 4558320
Alignment:
Q  1 tgagactctaccagatggtttaactccaatggatggtgatggtgatgttaatccagacttgaaatctattcgtgaatcgattagaaataaattcatttac 100  Q
    ||||||| | || |||||||||||||||| |||||||||||| ||||||| || |||| |  |  || || || |||| || ||||| || ||| |  |     
T  4558500 tgagactattccggatggtttaactccaacggatggtgatggcgatgttagtcaagacatttacgctctttgtaaatcaatcagaaagaacttcctacaa 4558401  T
Q  101 ccttttcgcgaacttctagctagacttgatgaatctgcaaaatctggtcttgttcctcctgttacttgcttagtttctgat 181  Q
    ||||| ||||||||||| ||||||||  |||| ||||||| |||||||||||| ||||| ||||||||| |||||||||||    
T  4558400 cctttccgcgaacttcttgctagactaaatgactctgcaacatctggtcttgtccctccagttacttgcatagtttctgat 4558320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 4587007 - 4586827
Alignment:
Q  1 tgagactctaccagatggtttaactccaatggatggtgatggtgatgttaatccagacttgaaatctattcgtgaatcgattagaaataaattcatttac 100  Q
    ||||||| | ||||||||||||||||||| |||||||||||||||||||| || |||| |  |  || || || |||| || ||||| || ||| |  |     
T  4587007 tgagactattccagatggtttaactccaacggatggtgatggtgatgttagtcaagacatttacgctctttgtaaatcaatcagaaagaacttcctacaa 4586908  T
Q  101 ccttttcgcgaacttctagctagacttgatgaatctgcaaaatctggtcttgttcctcctgttacttgcttagtttctgat 181  Q
    ||||| ||||||||||| ||||||||| |||| ||||||| |||||||||| | ||||| || |||||  |||||||||||    
T  4586907 cctttccgcgaacttcttgctagacttaatgactctgcaacatctggtcttatccctccagtcacttgtatagtttctgat 4586827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 141 - 265
Target Start/End: Original strand, 4483654 - 4483768
Alignment:
Q  141 aatctggtcttgttcctcctgttacttgcttagtttctgattgtctattgtcatttaccataaaagttgccgaagaacttgcacttccaattgttctcct 240  Q
    ||||||||||||| |||||||||||||||||||||||           |||||||||||||| ||||||  |||||||||||||||||||  ||||||||    
T  4483654 aatctggtcttgtgcctcctgttacttgcttagtttca----------tgtcatttaccatacaagttgttgaagaacttgcacttccaacggttctcct 4483743  T
Q  241 tgtcccatttagtgcttgttctttc 265  Q
    ||||| ||||||||  |||||||||    
T  4483744 tgtcctatttagtgtatgttctttc 4483768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 4496181 - 4496104
Alignment:
Q  32 gatggtgatggtgatgttaatccagacttgaaatctattcgtgaatcgattagaaataaattcatttacccttttcgc 109  Q
    ||||||||||||||| |||||||||||||| |||||  |||||||||||||||||||  ||| |||||||||||||||    
T  4496181 gatggtgatggtgatattaatccagacttgcaatctcgtcgtgaatcgattagaaatttatttatttacccttttcgc 4496104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 144 - 238
Target Start/End: Complemental strand, 4627382 - 4627288
Alignment:
Q  144 ctggtcttgttcctcctgttacttgcttagtttctgattgtctattgtcatttaccataaaagttgccgaagaacttgcacttccaattgttctc 238  Q
    ||||||||||| | || ||||||||||||||||| |||||| || |||||||||||||| ||| ||| ||||||| |||||| ||||||| ||||    
T  4627382 ctggtcttgttgcaccagttacttgcttagtttcagattgtttaatgtcatttaccatacaagctgctgaagaacatgcactcccaattgctctc 4627288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 238
Target Start/End: Complemental strand, 4599537 - 4599302
Alignment:
Q  2 gagactctaccagatggtttaactccaatggatggtgatggtgatgttaatccagacttgaaatctattcgtgaatcgattagaaataaattcatttacc 101  Q
    |||||| | |||||||||||||||||||| |||||||||||||||||||  |  ||| | || ||| |  || |||| || |||||||| ||| |  | |    
T  4599537 gagactattccagatggtttaactccaatagatggtgatggtgatgttacacaggacataaattctctctgtaaatcaatcagaaataacttcctccaac 4599438  T
Q  102 cttttcgcgaacttctagctagacttgatgaatctgcaaaatctggtcttgttcctcctgttacttgcttagtttctgattgtctattgtcatttaccat 201  Q
    | |||||||||||||| ||||||||  |||| ||| | |   |||||||| | ||||| ||||||||||||| || ||||||     |||| ||||| ||    
T  4599437 catttcgcgaacttcttgctagactctatgagtcttctactgctggtcttatccctccagttacttgcttag-ttatgattggaacatgtcctttactat 4599339  T
Q  202 aaaagttgccgaagaacttgcacttccaattgttctc 238  Q
    | ||||||| ||||||||| ||||||| |||||||||    
T  4599338 acaagttgctgaagaactttcacttcctattgttctc 4599302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 238
Target Start/End: Original strand, 4298394 - 4298488
Alignment:
Q  144 ctggtcttgttcctcctgttacttgcttagtttctgattgtctattgtcatttaccataaaagttgccgaagaacttgcacttccaattgttctc 238  Q
    |||||||||| || || ||||||||||||||| |||||| | || |||||||||||||| ||| ||| ||||||| |||||| |||||| |||||    
T  4298394 ctggtcttgtaccaccagttacttgcttagttgctgattttttaatgtcatttaccatacaagctgcggaagaacatgcactcccaattattctc 4298488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 241
Target Start/End: Original strand, 4255552 - 4255632
Alignment:
Q  161 gttacttgcttagtttctgattgtctattgtcatttaccataaaagttgccgaagaacttgcacttccaattgttctcctt 241  Q
    ||||||||||||||||||||||||    |||||||||||||| ||| ||| ||||| | |||||| |||||||||||||||    
T  4255552 gttacttgcttagtttctgattgttacatgtcatttaccatacaagctgctgaagagcatgcactcccaattgttctcctt 4255632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 4572241 - 4572161
Alignment:
Q  101 ccttttcgcgaacttctagctagacttgatgaatctgcaaaatctggtcttgttcctcctgttacttgcttagtttctgat 181  Q
    ||||| ||||||||||| ||||||||| |||| ||||||| |||||||||||| | ||| |||| |||| |||||||||||    
T  4572241 cctttccgcgaacttcttgctagacttaatgactctgcaacatctggtcttgtccgtccagttagttgcatagtttctgat 4572161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 4581389 - 4581209
Alignment:
Q  1 tgagactctaccagatggtttaactccaatggatggtgatggtgatgttaatccagacttgaaatctattcgtgaatcgattagaaataaattcatttac 100  Q
    ||||||| | ||||||||||||||||| || || || ||| |||||||||||| |||| |  |  || |  ||||||| || ||||| || ||| |  |     
T  4581389 tgagactattccagatggtttaactccgatagaaggcgatagtgatgttaatcaagacatatatgctctatgtgaatcaatcagaaagaacttcctacaa 4581290  T
Q  101 ccttttcgcgaacttctagctagacttgatgaatctgcaaaatctggtcttgttcctcctgttacttgcttagtttctgat 181  Q
    |||||| | |||||||| ||||||||| |||| ||||| |  ||||||||||| ||||| ||||||||| |||||||||||    
T  4581289 cctttttgtgaacttcttgctagacttaatgactctgccacttctggtcttgtccctccagttacttgcatagtttctgat 4581209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 3173378 - 3173319
Alignment:
Q  1 tgagactctaccagatggtttaactccaatggatggtgatggtgatgttaatccagactt 60  Q
    ||||||| ||||||||||||||||| ||||||| |||||||||||||||| || ||||||    
T  3173378 tgagactataccagatggtttaacttcaatggaaggtgatggtgatgttagtcaagactt 3173319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 4562037 - 4561992
Alignment:
Q  1 tgagactctaccagatggtttaactccaatggatggtgatggtgat 46  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||    
T  4562037 tgagactataccagatggtttaactccaaaggatggtgatggtgat 4561992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 235
Target Start/End: Original strand, 4259072 - 4259163
Alignment:
Q  144 ctggtcttgttcctcctgttacttgcttagtttctgattgtctattgtcatttaccataaaagttgccgaagaacttgcacttccaattgtt 235  Q
    ||||| ||||||| |||||||||||||||||||||||||||    |||||||||  ||| ||| ||| ||||| | |||||| |||||||||    
T  4259072 ctggtattgttccacctgttacttgcttagtttctgattgttacatgtcatttagtatacaagctgctgaagagcatgcactcccaattgtt 4259163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 4575830 - 4575783
Alignment:
Q  1 tgagactctaccagatggtttaactccaatggatggtgatggtgatgt 48  Q
    ||||||| ||||||||||||||||||||| ||||||| ||||||||||    
T  4575830 tgagactataccagatggtttaactccaaaggatggtaatggtgatgt 4575783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 235
Target Start/End: Complemental strand, 4623539 - 4623448
Alignment:
Q  144 ctggtcttgttcctcctgttacttgcttagtttctgattgtctattgtcatttaccataaaagttgccgaagaacttgcacttccaattgtt 235  Q
    ||||||||||||| || ||||||||||||||||| ||||||    |||||||||| ||| ||| ||| ||||| | |||||| |||||||||    
T  4623539 ctggtcttgttccaccagttacttgcttagtttccgattgttacatgtcatttacaatacaagctgctgaagagcatgcactcccaattgtt 4623448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 4503054 - 4503105
Alignment:
Q  9 taccagatggtttaactccaatggatggtgatggtgatgttaatccagactt 60  Q
    |||||||||||||||||||  |||| |||||||||||||||| || ||||||    
T  4503054 taccagatggtttaactccggtggaaggtgatggtgatgttagtcaagactt 4503105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 4618666 - 4618627
Alignment:
Q  11 ccagatggtttaactccaatggatggtgatggtgatgtta 50  Q
    |||||||||||||| |||||||| ||||||||||||||||    
T  4618666 ccagatggtttaacaccaatggaaggtgatggtgatgtta 4618627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 4623672 - 4623625
Alignment:
Q  11 ccagatggtttaactccaatggatggtgatggtgatgttaatccagac 58  Q
    |||||||||||||| |||||||| |||||||||||||||| || ||||    
T  4623672 ccagatggtttaacaccaatggaaggtgatggtgatgttagtcaagac 4623625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 4488950 - 4488999
Alignment:
Q  1 tgagactctaccagatggtttaactccaatggatggtgatggtgatgtta 50  Q
    ||||||| | |||||||||||||||||||  ||||||||||| |||||||    
T  4488950 tgagactattccagatggtttaactccaacagatggtgatggcgatgtta 4488999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 4594377 - 4594336
Alignment:
Q  9 taccagatggtttaactccaatggatggtgatggtgatgtta 50  Q
    ||||||||||| |||| |||||||| ||||||||||||||||    
T  4594377 taccagatggtctaacaccaatggaaggtgatggtgatgtta 4594336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 103 - 265
Target Start/End: Original strand, 20862659 - 20862821
Alignment:
Q  103 ttttcgcgaacttctagctagacttgatgaatctgcaaaatctggtcttgttcctcctgttacttgcttagtttctgattgtctattgtcatttaccata 202  Q
    |||||| |||||||| || | |||| |||| ||| | |||||||||||| | ||||||||||||||||||||||||||| || |  ||||| ||||||||    
T  20862659 ttttcgtgaacttcttgccaaacttcatgactcttccaaatctggtcttatacctcctgttacttgcttagtttctgatagtttcatgtcagttaccata 20862758  T
Q  203 aaagttgccgaagaacttgcacttccaattgttctccttgtcccatttagtgcttgttctttc 265  Q
     ||||||| |||||||||||||| ||||||||||||||| |||||| ||||||||||||||||    
T  20862759 caagttgctgaagaacttgcactcccaattgttctccttatcccatctagtgcttgttctttc 20862821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 231
Target Start/End: Original strand, 2310 - 2437
Alignment:
Q  104 tttcgcgaacttctagctagacttgatgaatctgcaaaatctggtcttgttcctcctgttacttgcttagtttctgattgtctattgtcatttaccataa 203  Q
    |||||||||||||| ||||||||||| || ||||| || ||||||||| | ||||| || ||| |||||||||||||||||    ||||||||||||||     
T  2310 tttcgcgaacttcttgctagacttgacgagtctgccaattctggtcttatccctccagtaactagcttagtttctgattgttacatgtcatttaccatac 2409  T
Q  204 aagttgccgaagaacttgcacttccaat 231  Q
    ||| ||| ||||||  |||||| |||||    
T  2410 aagctgctgaagaatatgcactcccaat 2437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 184
Target Start/End: Complemental strand, 2093 - 2013
Alignment:
Q  104 tttcgcgaacttctagctagacttgatgaatctgcaaaatctggtcttgttcctcctgttacttgcttagtttctgattgt 184  Q
    |||||||||||||| ||||||||||| || ||||| || ||||||||| | ||||| || ||| |||||||||||||||||    
T  2093 tttcgcgaacttcttgctagacttgacgagtctgccaattctggtcttatccctccagtaactagcttagtttctgattgt 2013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 238
Target Start/End: Original strand, 3418 - 3512
Alignment:
Q  144 ctggtcttgttcctcctgttacttgcttagtttctgattgtctattgtcatttaccataaaagttgccgaagaacttgcacttccaattgttctc 238  Q
    ||||||||||||| |  ||||||||| ||||  ||||||||    || ||||||||||| ||| ||| ||||||| |||||| ||||||||||||    
T  3418 ctggtcttgttccacaagttacttgcatagtcgctgattgttacatgccatttaccatacaagctgctgaagaacatgcactcccaattgttctc 3512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 3088108 - 3088060
Alignment:
Q  13 agatggtttaactccaatggatggtgatggtgatgttaatccagacttg 61  Q
    ||||||| ||||||||||||| ||| |||||||||||| || |||||||    
T  3088108 agatggtctaactccaatggaaggtaatggtgatgttagtcaagacttg 3088060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University