View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20315_high_25 (Length: 238)
Name: NF20315_high_25
Description: NF20315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20315_high_25 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 39967067 - 39967269
Alignment:
| Q |
18 |
atataacaattgaatcttcttacatttcattacacatcgaaccttacaattaaatgaataaagtatgaacatcaaacgaatgttgatacaaagtttaaag |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39967067 |
atataacaattgaatctccttacatttcattacacatcgaaccttacaattaaatgaataaagtatgaacatcaaaagaatgttgatacaaagtttaaag |
39967166 |
T |
|
| Q |
118 |
tcttattgggcatgctatttatagcttatatgaacaaacttgtaaaaagataacacctattaacacaacaaatcccaatatccagtgcctgttatcaatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39967167 |
tcttattgggcatgctatttatagcttatatgaacaaacttgtaaaaagataacacctattaacacaacaaatcccaatatccagtgcctgttatcaatt |
39967266 |
T |
|
| Q |
218 |
tat |
220 |
Q |
| |
|
||| |
|
|
| T |
39967267 |
tat |
39967269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University