View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20315_high_7 (Length: 505)
Name: NF20315_high_7
Description: NF20315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20315_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 19 - 491
Target Start/End: Original strand, 44507057 - 44507521
Alignment:
| Q |
19 |
atggtacaagtcaacctgattaattcgatgacccaacccgactcaaaatatttggtttaggtttttattttagtttggactgaacttgaatcatcctaaa |
118 |
Q |
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| T |
44507057 |
atggtacgagtcaacctgattaattcgatgacccaacccgactcaaaatatttggtttaggtttttattttagtttggactgaacttgaattatcctaaa |
44507156 |
T |
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| Q |
119 |
atggtttggttcggttaatattacatgtcaaaccctatgaacgtgtgtataggggagggagggagagtctcaattgagggccgaaataagagaacaatat |
218 |
Q |
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| T |
44507157 |
atggtttggttcggttaatattacatgtcaaaccctatgaacgtg--------ggagggagggagagtctcaattgagggccgaaataagagaacaatat |
44507248 |
T |
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| Q |
219 |
gcaattttagcaacaaacatgcaagctaaagtatggggagatactccactgttatccatgtgtagcttttcaaccaatccatagagagatgaaacatata |
318 |
Q |
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| T |
44507249 |
gcaattttagcaacaaacatgcaagctaaagtatggggagatactccactgttatccatgtgtagcttttcaaccaatccatagagagatgagacatata |
44507348 |
T |
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| Q |
319 |
ttctaacaaagcaacaaaccattacattcgattaaactacacatgacaaagtattttgatcacgagtaacatagtgatacgtacggaatagggaattgag |
418 |
Q |
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|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44507349 |
ttgtaacaaagcaacaaaccattacattcgatgaaactacacatgacaaagtattttgatcacgagtaacatagtgatacgtacggaatagggaattgag |
44507448 |
T |
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| Q |
419 |
aaatcgtttagaacatagccggagttgttaaggagaaacctcaattttatgccaaatagaacgataattaaat |
491 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| || ||||| |
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| T |
44507449 |
aaatcgtttagaacatagcaggagttgttaaggagaaacctcaatttaatgccaaatagaacgagaactaaat |
44507521 |
T |
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