View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20315_high_8 (Length: 472)
Name: NF20315_high_8
Description: NF20315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20315_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 11 - 457
Target Start/End: Complemental strand, 11630247 - 11629801
Alignment:
| Q |
11 |
cagagagtgcagaaagactaattaatttttcaatgcagaaacataagtccttcccatcttcctctctgagtctcatgatgcctaaccttcttagttggct |
110 |
Q |
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| T |
11630247 |
cagagagtgcagaaagactgactaatttttcaatgcagaaacagaaatccttcccatcttcctctctgagtctcatgatgcctaaccttcttagttggct |
11630148 |
T |
|
| Q |
111 |
tagctcctttaactgtcttattatcattccgcatcctttgtttgcctctacaaaacaaagcttttgcagtgactgtaagtttcctatttcaagcggggct |
210 |
Q |
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| T |
11630147 |
cagctcctttaaatgtcttattatcattctgcatcctttgtttgcctctacaaaacaaagcttttgtagtgactgtaaatttcctatttcaaggggggct |
11630048 |
T |
|
| Q |
211 |
ttaaaaccatatttggagtgaaattgtgcgtaaccttcgactttagactggtatacaagaagatgacgtagcttcttaacctttactatatctgcaggca |
310 |
Q |
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| T |
11630047 |
ttaaaaccatatttggagtgaaattgtgcgtaaccttcgactttagactggtatacaagaagatggcgtagcttcttaaccttcactatatctgtaggca |
11629948 |
T |
|
| Q |
311 |
attctgtaacacaagtattcttgagatccagtgtttctagattttgcaactttcctagtacacaatttggaatcgttttcacctgtgtgtttcttaagct |
410 |
Q |
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| T |
11629947 |
attctgtaacacaagtattcttgagatccagtgtttctagattttgcaactttcctagtatacaatttggaatcgttttcacctgtgtgtttctcaagct |
11629848 |
T |
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| Q |
411 |
cagatatgttaaatgatattggtcaacaaccgctgctggaaacttct |
457 |
Q |
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| T |
11629847 |
cagatatgttaaatgatataggtcaacaactgctttcggaaacttct |
11629801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 25 - 455
Target Start/End: Complemental strand, 11652541 - 11652111
Alignment:
| Q |
25 |
agactaattaatttttcaatgcagaaacataagtccttcccatcttcctctctgagtctcatgatgcctaaccttcttagttggcttagctcctttaact |
124 |
Q |
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|||||| | |||||||| ||||| |||| || |||||||||||||||||||||||||||||||||||||| |||||||| ||||||| || || ||| | |
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| T |
11652541 |
agactagtcaatttttcgatgcaccaacaaaattccttcccatcttcctctctgagtctcatgatgcctaatcttcttagctggcttaacttctgtaatt |
11652442 |
T |
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| Q |
125 |
gtcttattatcattccgcatcctttgtttgcctctacaaaacaaagcttttgcagtgactgtaagtttcctatttcaagcggggctttaaaaccatattt |
224 |
Q |
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| T |
11652441 |
gtcttattatcatgccacaaccttggtttgcctctacaaaacaaagcttttgcagtgactgtaatttacctatttcaagaggtgccttaaaaccatattt |
11652342 |
T |
|
| Q |
225 |
ggagtgaaattgtgcgtaaccttcgactttagactggtatacaagaagatgacgtagcttcttaacctttactatatctgcaggcaattctgtaacacaa |
324 |
Q |
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| T |
11652341 |
cgagtggaattgtgcataaccttctactttagactgatatacaagcagattgcgaagctttttaaccttgactatatctgcaggcaattctgtaacacga |
11652242 |
T |
|
| Q |
325 |
gtattcttgagatccagtgtttctagattttgcaactttcctagtacacaatttggaatcgttttcacctgtgtgtttcttaagctcagatatgttaaat |
424 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| | ||||||||||||||||||| |
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| T |
11652241 |
gtattcttaagatcaagtgtttctagattttgcaactttcctagtacacattttggaagcactttcacctgtgtgtttttcaagctcagatatgttaaat |
11652142 |
T |
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| Q |
425 |
gatattggtcaacaaccgctgctggaaactt |
455 |
Q |
| |
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||||| |||||||||| ||| ||||||||| |
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|
| T |
11652141 |
gatataggtcaacaactgcttttggaaactt |
11652111 |
T |
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